Pseudoalteromonas sp. NC201: PNC201_00515
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Entry
PNC201_00515 CDS
T05464
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNC201_00515 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psen03019
]
PNC201_00515 (rhlB)
Enzymes [BR:
psen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNC201_00515 (rhlB)
Messenger RNA biogenesis [BR:
psen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNC201_00515 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AUJ68458
UniProt:
A0A2K9JSZ5
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All DBs
Position
105899..107179
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AA seq
426 aa
AA seq
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MTKTHLTNKTFNDFALAPEVVAGLQENGFEFCTPIQAKCIPYICEGRDIAGQAQTGTGKT
LAFLTATCHRLLQTKKDKKTQPRAIIMAPTRELAIQIHKDAQVIAPRCDLKLALVYGGED
YEKQRAQLEKGADILIGTTGRLIDFYKQGAYNLNDIEVVVLDEADRMFDLGFIKDIRYLF
NRMPGREERLNLLFSATLSYRVQELAFEHMTNPIHVQIEPDVKTGKRIQEELFHPSTEDK
IPLLLTLIEEEWPEKAIIFANTKHSCENVYAWLKADGHRAGLLTGDVNQKKRQSILAQFT
RGDVDLLVATDVAARGLHIPEVSHVFNFDLPDDREDYVHRIGRTGRAGASGHAISFACEQ
YAYNLHEIEEYIEHAIPVSHYDKTALLTDLRAPQVNKRRHSGHGNSGNKQRGGGRRTGGY
RKPQSK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttgaccaataaaacattcaacgactttgctttagcgccggaagtg
gtcgccggtttacaggaaaatggcttcgaattttgtacgccaatccaagcaaagtgtata
ccttacatctgtgaaggccgcgatatcgcgggtcaggcacaaactggtacgggcaaaacc
cttgcgtttttgaccgcgacctgtcatcgcctattgcagactaaaaaggataaaaaaacg
caacctcgtgcaattattatggcaccgactcgagagttggctatccaaatacataaggac
gcgcaagtcattgcgccacgttgtgatcttaagcttgcccttgtatatggtggcgaagat
tacgaaaaacaacgggctcaactggaaaaaggtgcggatatactaatcggaacgactggg
cgtttaatcgatttttataagcagggtgcttataacctcaatgatatcgaagtggttgtg
ctagatgaagcagaccgaatgtttgatttaggttttatcaaagacattcgttatttgttc
aatcgcatgccaggtcgtgaagagcgattaaatctattattctctgcaacactgtcatac
agagtgcaagagttagcattcgaacacatgaccaatcctattcatgtgcaaattgagcca
gatgttaaaacgggcaagcgtattcaagaagagctatttcacccgtcaacagaggacaaa
atacctttactgctgactttgattgaggaagagtggccagagaaggcaatcatttttgct
aatactaagcacagctgcgaaaacgtatatgcatggctgaaagcggatggtcaccgtgct
ggtttgcttactggcgatgtgaaccaaaagaaacgccaatcaatattagcgcagtttacg
cgtggtgatgttgacttgctggttgcgactgatgttgcagcacgtggtttacatattcct
gaagtaagtcatgtgttcaactttgacttgccggatgacagagaagactacgttcaccgc
attggtcgtacgggtcgagctggtgcatctggacatgcgattagtttcgcgtgcgagcaa
tatgcctacaatttacatgagatagaagaatacatagaacatgcaattcctgtttctcat
tatgataaaacagcactattaactgacttgcgtgcgcctcaagtaaataaacgtcgtcat
tcaggccatggtaatagtggtaacaagcaacgtggtggcggtcgccgaactggtggctat
agaaaaccacaatccaaataa
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