Pseudoalteromonas sp. NC201: PNC201_05245
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Entry
PNC201_05245 CDS
T05464
Symbol
hrpB1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psen
Pseudoalteromonas sp. NC201
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psen03019
]
PNC201_05245 (hrpB1)
Enzymes [BR:
psen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PNC201_05245 (hrpB1)
Messenger RNA biogenesis [BR:
psen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PNC201_05245 (hrpB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
Flavi_DEAD
AAA_22
Helicase_RecD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AUJ69362
UniProt:
A0A2K9JVK3
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All DBs
Position
1285276..1287786
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AA seq
836 aa
AA seq
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MLPIEAFIPEIISTLNNDNRLVLQAEPGAGKSTLVPLRLLQADIFSGKKIIMLEPRRVAA
KSIATYLAKQLGESVGERVGYQIRNEQRVSSNTRLEIVTEGVLTRRLQADPELSDVALII
FDEFHERSIHADLALMLAFEVQQAYRDDLKLLVMSATIDTELLSNYLDGAPRLSCPGKTY
PVEIEYVGKASRYLAEHVLSALRHAFTLQSDGDVLVFLPGQADIQRCIEACQVLDQSNIE
LLPLYGGLPLSEQEKVLSKSASASRRIIFSTNIAETSLTITGITMVIDSGLEKRLTYDVR
SGLSRLDTVMISKASATQRAGRAGRLQAGHCLRLWRESEHNNLSDFQPEEITTTDLSDLA
LELSAWGVTQYKDANWLTSPPVQHFSVACQLNQSLGLVDAHNKVLTAGQRALQLGVSPRL
ACMLLRCESLISQQLACFLAAILSERDILVQANTSDVCERVLALVEFVQDRTRAAKAYRL
HRAVAEQAVKLAKSFAHRLGISLKSEAITLVDIQTLAPTLLLHAFPDRAAQKRPLGDNRY
LLANGRGVTLRDGDPLQGQAYLIVCDVDGKNKDGLVFLSCAIEKSTLLEQLAPYLSEVVQ
YQLDSKKEAIQGRQQVKYHALVLKEQNLSQIPKEAFAQCVKDILTSEGLGLLNWSVKSHA
WLARAKWLSEQLNTFPQISESSLIAQLDTWLLPYLTGVNTIKQLKQLDIFNLLQATLTWE
QQQQLEAQAPEFYVTPSDKRVAIRYDEHQGPTVSVVLQEMFGQLTSPTLANGQVAVRFEL
LSPAKRPIQTTSDLSNFWQTSYFEVAKEMRGRYPKHRWPDKPLEEKPGRSIKARGK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
ttgctgccgattgaagccttcatccccgagattatttccaccttaaacaatgataaccgt
ctggtattacaagccgagcccggcgcaggtaaatcgaccttagtgccgctgcgtttactg
caagctgatattttttccggtaaaaaaattattatgcttgagccacgtcgtgttgctgca
aaatctatcgcgacctatttggccaaacagctgggggaatcggtcggtgagcgagtcggt
tatcaaatccgaaacgagcaacgtgtttcatccaacacccgcttggaaatcgtcaccgaa
ggcgtattgactcgccgtcttcaagcggatcccgaactcagtgatgttgcacttattatc
ttcgatgaattccatgagcgttctattcatgcggatctagctttaatgctcgcgtttgaa
gtgcaacaagcgtatcgcgacgacctcaaattactggtgatgtctgcaacgatagacacc
gagcttttatcgaattatctggatggtgcaccaaggttatcttgccccggtaaaacctat
cctgttgaaattgaatatgtcggtaaagcgagtcgttacttagcggagcatgtattaagt
gcgctgcgtcacgctttcactctacaaagcgatggtgatgtattggtttttcttcctggg
caggctgatattcagcgctgcattgaggcgtgccaagtgcttgaccaaagtaatattgag
cttctgcctttgtacggcgggttacccttatctgagcaagagaaagtactcagtaaaagc
gccagcgcatcaagacgtattattttttcgaccaatattgctgagaccagtttgactata
accgggatcactatggttatagattctggccttgaaaaacgcttaacctatgacgttaga
agcggtctctcgcggctcgatacggtgatgatctcaaaggcatcagcaacacaacgtgca
gggcgtgcgggtcgtctacaagcgggccattgtttacgtctttggcgcgaaagcgagcat
aataatttaagtgactttcagccagaagaaataaccaccactgacctttctgacttagcg
ttagagctcagcgcgtggggagtgacacaatacaaggacgcgaattggctaacatcgcca
ccggtgcaacatttttcggtggcctgtcaattgaatcagtcgcttggcttggtcgatgcg
cataataaagtgttaactgctgggcagcgtgcactacaactgggggtttcgcctcgtctt
gcctgcatgctactgcgatgtgagtcgctaatttcgcaacaacttgcttgttttttggcg
gcaatattgagcgagcgagatattttagtacaagctaacacaagtgatgtatgtgaacga
gtattggcattggtagagtttgtgcaagaccgtacccgtgccgccaaagcatatcgcttg
cacagagctgtcgcagagcaggccgtaaaattggccaaatcatttgcacacagactggga
attagtctcaagagtgaagcaatcacccttgtagatattcaaaccttagcacctacttta
ttgctccatgcctttcctgacagagctgcacaaaaacgtcctttaggggacaaccgctac
ttacttgcgaatggtcggggggtgacattacgtgacggcgatccgctgcaaggtcaggct
tatttgattgtttgtgatgtggatggcaaaaataaggatggcttggtatttctaagctgc
gcaatcgaaaagagcacattacttgagcagctagcgccatatttgagtgaggtggtgcag
tatcaactggatagtaaaaaagaggcgattcagggccggcaacaagttaaatatcatgct
ctggtattaaaagagcaaaacctgagtcagatccccaaagaagcgtttgcccaatgtgtg
aaggatattctcacatcggaaggacttggtttgctcaattggtcggtaaaaagtcacgct
tggctcgctcgagctaaatggttaagtgaacaattgaataccttcccacagatatctgag
tcaagtttgatagcgcagcttgatacttggttattgccctatttgacgggcgtaaacact
atcaaacaactgaagcaactggatatttttaacctgcttcaagcgacactcacttgggag
cagcaacagcaactcgaagcgcaagcacctgagttttatgttacgccaagcgataagcga
gtcgcgatccgctacgatgagcaccaagggccaaccgtttctgtggtgttacaagaaatg
tttggtcaattgacgtcgccaacgctcgccaatggtcaagtcgcagtgcgatttgagctg
ttatctccagcgaaaaggccaatccaaaccaccagtgatttaagcaacttttggcaaact
tcttattttgaggtggccaaagaaatgcgtggtcgatatccaaaacaccgatggccagat
aaaccgcttgaggaaaagcccggccgctccataaaagcgagaggaaagtag
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