Pseudoalteromonas sp. NC201: PNC201_06715
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Entry
PNC201_06715 CDS
T05464
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psen
Pseudoalteromonas sp. NC201
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psen03019
]
PNC201_06715 (hrpB2)
Enzymes [BR:
psen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PNC201_06715 (hrpB2)
Messenger RNA biogenesis [BR:
psen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PNC201_06715 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
WHD_HA2
ABC_tran
AAA_23
NNH7
Motif
Other DBs
NCBI-ProteinID:
AUJ69654
LinkDB
All DBs
Position
1633632..1637525
Genome browser
AA seq
1297 aa
AA seq
DB search
MQVDSLFKELNSCLKKDHFILKKRLHGAKKITDQEKQKQVVAKVAAAIAKSQELKVTRSA
NIPAVEYPEQLPVSQKKDDIKAAIANNQVVIVAGETGSGKTTQLPKICLELGRGVDGYIG
HTQPRRLAARSVSTRIAEEIGCEMGQEVGFKIRFSDQVSDNTYVKLMTDGILLSEIQQDR
FLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKHFSDAPI
IEVSGRTYPVEVRYRPVEDVDSQNGEAENDQLQGIFDAVDELCAEGPGDILVFMNGEREI
RDTADALAKRNLKGVEILPLYARLSNAEQNRIFAPHSQRRIVLSTNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAVSQASANQRKGRCGRVASGICIRLYSEDDFLGRPEF
TDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRNIKDGMSLLEELEAIVPAQRREK
AKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVITAALSIQDPRERPQDKRAAADE
KHNRFECEHSDFVAYLNLWNYIEAQQQALTRNQFRKQCQKDFLAYMRVREWQDIVYQLTT
VCEELGFKINSSPASDEAVHQSLLSGMLSHIGVKDEKQKQVFKGARNSQFHIFPGSTLFK
KSPKWLMSAELVETSKLYARVNAKIDVNWIAPLAKHLVNSSYSEPHWEKKAGAVVAFEQQ
TLYGLIIVGRKRTVYSDIDPVVSREIFIREALANGQLGQSEGFLSANQKLVEEVQALEDK
ARRRDILVDEEDVVAFYNDRIPQDVNNRAAFSKWWRSQKQKDKRFLHMTRDLLMKRDAEH
ITDTHYPDTWQQGNLILPLSYHFDPGQALDGVVVNIPLALLNQVQDEGFDWHIPALRHEL
VCGLIKSLPKTLRRNFVPAPNYADAVLAAVEVMQGSFIEAVANRLLRMTGVKVTESDWDV
SSLEPHLKMQFQVVDDKGKVIAHGFDLLALKAKLQGQVTETLSQVAEQGIEQTDIQQWDF
GELPEQYTKKQGNYEIKAFPALVDKKQSAAIELFDNEIKAQAAHQAGLRRLVLLNVPSPV
KYLQQHLPNKAKLGLYFNPFGKVHDLVDDCTQAGVDKLLRAFGEIRDDIAFEKAKEHIRA
ELGDTVVEIAKQVEAVLSIAHSINKRMKGRVDLTMITAHGDIKSQLSGLIFKGFVTAHGA
DKISDILRYMKAIEKRLEKLAVDPNRDRLCVLELEKVAAAYQDKLAKIPSGLPVPESLID
IFWMQQELRVSLFSQTLGTAYPISAKRVLNSIKECEI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggttgactcgctgttcaaagagctaaattcatgtcttaaaaaggatcacttcatc
ctcaaaaagcgcctccatggtgcgaaaaaaattaccgatcaagaaaagcaaaagcaggta
gtcgcaaaagtagcggctgcgattgcaaaaagccaagaattaaaggtaacaagaagtgcc
aatattccagcagtagagtatcctgagcaactacccgtcagccagaaaaaagacgacata
aaagcagccattgcgaataaccaagtggttattgttgccggtgaaacgggctcggggaag
accacgcagctgcctaaaatttgtttagagttaggtcgaggcgtggatggctatattggt
catacacaaccaagaagactagcggcaagaagcgtatctacccgtattgcagaggaaatt
ggctgcgagatggggcaagaagttggatttaaaattcgcttctcagatcaagtctctgac
aatacatacgtaaaactgatgaccgacggtattttgctctcagagattcaacaagacaga
ttcctcaaccagtacgacacaatcatcattgatgaagcgcacgagcgtagcctgaatatt
gattttattctgggttatttaaagcagctgttgccgaagcgtccagatcttaaagtgatt
atcacctcagcaaccattgatcctgagcgtttttccaaacattttagtgacgcacctatt
attgaggtgtcaggacgaacttatccagtagaagtgagatatcgtccagttgaagatgtt
gactcacaaaatggcgaagcagaaaatgaccaattgcagggcatttttgatgcggttgat
gagctttgtgccgaaggacctggggatattttggtatttatgaacggtgagcgtgaaatt
cgtgacaccgctgacgcgctggcaaaacgcaatttaaaaggcgttgagattttacctttg
tatgcgcgcctgtctaatgccgaacaaaatcgcatttttgcgccccatagccaacggcgc
atcgtattgtctacaaacgttgcagaaacgtcattgaccgtaccaggtattcgctatgtt
atcgacccgggtactgcgagaataagccgctacagttatcgaaccaaagtacaacgctta
ccgattgaagcggtatcacaagccagtgcaaaccagcgtaaaggtcgatgtggccgtgtg
gcatccggtatttgtattcgtttatattctgaagacgactttttagggcgtcctgagttt
accgatcctgaaattctaagaaccaatttagcttcggttattttgcaaatgctcgcactt
ggacttggtgatataagtcaattcccttttgtacaagcacctgatagccgtaatatcaaa
gatggtatgtcgttacttgaagagctggaggcgatagttcctgctcagcgcagagaaaaa
gccaagctcacagaatcaggtcgtaaactaagtcgcttacccatagacccaaggcttgcc
aagatggtgatgtcaggggcacaaaacaacgcgctttgggaagcgatagtgatcaccgcg
gcactgtctattcaagacccaagagagcgtcctcaagataaacgtgcagcagctgacgaa
aaacacaatcgctttgagtgcgaacactctgattttgttgcatatctaaatctatggaat
tacatcgaagcgcagcagcaagcactgacgcgtaaccagtttcgaaagcaatgccaaaaa
gactttttggcctacatgcgcgtacgtgaatggcaagatattgtttaccagctgactacg
gtgtgtgaggagctcggctttaaaataaatagcagtcctgcaagcgatgaagctgtccat
caatcattgctaagcggtatgcttagccatattggtgtgaaagacgaaaagcaaaaacaa
gtgtttaaaggcgcacgtaacagccaatttcatattttccccggttcaacactatttaag
aaaagccctaagtggttgatgtctgctgagcttgtggaaaccagtaaactttatgctcgg
gttaatgccaaaatcgatgtaaattggattgcgccgctcgctaagcatttagttaatagc
agctatagcgaaccgcattgggagaaaaaggctggagcggttgtcgcatttgaacagcaa
accttatacggcttgatcatcgttggccgcaagcgcacggtgtatagcgatattgatcct
gtggttagccgagagatatttattcgtgaagcgttggcaaatggtcaactaggccagagc
gaaggttttttaagcgcaaaccaaaaattggttgaagaagtgcaagcgcttgaagataaa
gcaaggcgtcgcgatatcctagtcgacgaagaagatgtggttgcgttttataacgatcga
attccacaagacgtaaataatcgtgctgcgtttagtaaatggtggcgttcacaaaagcaa
aaagacaaacgctttttgcatatgacgcgcgatctgttaatgaaacgtgacgccgaacat
atcacggatactcattacccagatacgtggcagcaagggaatttgatcttgcctctcagt
tatcactttgatccaggccaagcactagacggcgtggtggtcaatattcctctggcacta
ttaaaccaagttcaagatgaaggttttgattggcatattcctgcgctcagacatgagctg
gtttgtgggcttattaagtcactgccgaagaccttaagacgtaattttgtgccagcacca
aattatgccgatgctgtgcttgccgccgttgaggtaatgcaaggctcatttatagaagcg
gtggccaaccgtttactcagaatgacaggtgtcaaagtcaccgagtcagattgggatgtt
agttcacttgagccgcacttaaaaatgcaatttcaggtagttgatgacaaaggtaaggtg
atagcccatggctttgatttattggcacttaaagcaaagttgcaagggcaagtgaccgag
acgctttcgcaagtggcagagcaagggatcgagcaaacggatattcagcagtgggatttt
ggcgagctaccagaacaatatactaaaaagcagggaaattatgagattaaggctttccca
gcattagtcgataaaaaacaaagtgcggctatagaactgtttgataacgaaataaaagcc
caagcggcgcatcaagcaggattgcgccgtcttgtgctactcaatgttccttcgcccgtt
aaatacctgcaacagcacttaccaaataaggctaagttaggattgtactttaaccccttt
ggtaaagtgcatgatttagttgatgactgtacgcaagctggggttgataagctgctgcgt
gcatttggcgagatcagagatgacattgcgtttgaaaaagccaaagagcacattcgagct
gagctaggtgacaccgtagttgaaattgcgaagcaagttgaggcggtgcttagcattgct
cacagtattaacaaacgcatgaaaggcagagtggatctcacgatgatcaccgcgcatggc
gacataaaatctcagttatccggtcttatctttaaaggctttgtcaccgctcatggtgct
gacaaaatctctgatattttgcgctacatgaaagcgattgagaaaaggcttgaaaaactt
gcggtagatccaaacagagataggctgtgtgtactagaattggaaaaagttgctgcggcc
tatcaagacaagttggcaaaaatcccttctggattacctgtaccagagtcgcttatagat
attttttggatgcaacaggaacttcgcgtgtctttgttttctcaaacattaggaacggct
tatccgatttcggctaaacgcgttctgaattcgataaaagagtgcgaaatataa
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