Pseudoalteromonas sp. NC201: PNC201_08080
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Entry
PNC201_08080 CDS
T05464
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PNC201_08080 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psen03400
]
PNC201_08080 (sbcB)
Enzymes [BR:
psen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PNC201_08080 (sbcB)
DNA repair and recombination proteins [BR:
psen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PNC201_08080 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PNC201_08080 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PNC201_08080 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AUJ69910
UniProt:
A0A2K9K254
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All DBs
Position
complement(1937199..1938668)
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AA seq
489 aa
AA seq
DB search
MTNTNQSDTPNNAQNIPTIFWHDYESWGATPQKDRPSQFAGIRTDLDLNIIGEPLIEYCQ
PAPDYLPHPQACLVTGITPQLALKKGLTEAEFMARIHTEFAKPQTCVAGYNSIRFDDELT
RYSLYRNFYDPYEREWQNGNSRWDIIDLVRACYALRPEGIEWPTREDGNPSFKLEHLTVA
NGIEHGAAHDALSDVTATIALAKLIKTKQPKLYEFYFNHRHKKAVSSLIDVFNMQPLVHV
SSMFPAQQGCTTWIAPMSFHPVNSNAVICFDLTQSPEVLNDLDVEALKQRLYTKRSELGD
DELPVGLKLVHINKCPLVAPAKTLLPENAARLGIDREQCLENLKYLKARPELRDKVAEVF
SDEKGFDKPSNPDYQLYNGFTSKADKAKFAIIRNASPEELATIELDFEDSKFNTLLFRYR
ARNWPQSLSPVELDKWRKYCQNKLMHNEDNPSISAEDFMLELENLVAENEGNEHNMQILK
ALYHYAQSL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatacaaaccaatcagatacaccgaataatgcccagaacatcccaactattttc
tggcacgactacgagagttggggtgcgacgccgcaaaaagacaggccaagccaatttgct
gggatcagaacggatctggacctcaatattattggtgagccactgattgagtattgtcaa
ccagcacctgactatctcccgcatcctcaagcctgtttggtcactgggatcacaccacag
ttagcactaaaaaaaggcctgaccgaggctgagtttatggcaaggatccacactgaattt
gcaaagccacaaacctgcgttgctggatataacagtattcggtttgacgatgagctaacc
cgttatagcctttatcgtaacttttatgacccctatgagcgtgaatggcaaaatggcaat
agccgttgggacatcatagatctggtaagagcctgttatgcgcttcgcccagaaggaata
gaatggccaaccagagaagatggcaatccgagttttaaactggaacacttaaccgtcgcc
aatggcattgagcacggcgccgcgcacgatgcattgagtgatgttaccgcaacgatcgcg
ctggctaaactgattaaaaccaaacagccaaaactgtatgagttctactttaatcacaga
cataaaaaagcggtatcgagcctaatcgacgttttcaatatgcagcctttggtgcacgtt
tcttctatgtttccggcacaacaaggttgcaccacttggattgcgccgatgagttttcac
ccggtcaatagcaatgccgtgatctgctttgacttaacacagtcgccagaggtattgaat
gaccttgacgttgaggcgctcaaacaacggctttatacaaaacgcagcgaattgggtgat
gatgagttaccagttggattaaaactagtacatatcaataaatgcccgttggttgcgccc
gctaaaaccctcttgcccgaaaacgcagcgaggcttggaattgaccgcgagcaatgcctt
gaaaacttaaagtaccttaaagcacgtccagagctaagggataaggttgcagaagtcttt
agcgatgaaaagggattcgataaaccaagcaatccggattatcaactctacaacggtttc
accagtaaggccgataaagccaaatttgcaatcattcgcaatgcatcgcctgaagagttg
gcaaccattgaactggattttgaagacagtaaatttaacacgttgctgtttcgctatcga
gcaagaaactggccgcagtcgctctcacctgtagagcttgataaatggcgtaaatactgc
caaaacaagttgatgcataatgaagataacccttcaatttcagccgaagattttatgcta
gagcttgaaaatttagtcgcagagaatgaaggtaatgagcacaatatgcagatcttaaaa
gcgctttatcattacgctcaaagtttgtag
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