Pseudoalteromonas sp. NC201: PNC201_08125
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Entry
PNC201_08125 CDS
T05464
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03030
DNA replication
psen03430
Mismatch repair
psen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PNC201_08125 (holB)
03430 Mismatch repair
PNC201_08125 (holB)
03440 Homologous recombination
PNC201_08125 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psen03032
]
PNC201_08125 (holB)
03400 DNA repair and recombination proteins [BR:
psen03400
]
PNC201_08125 (holB)
Enzymes [BR:
psen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PNC201_08125 (holB)
DNA replication proteins [BR:
psen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PNC201_08125 (holB)
DNA repair and recombination proteins [BR:
psen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PNC201_08125 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_16
nSTAND3
AAA_5
RNA_helicase
AAA_22
CbiA
AAA_14
VMAP-M20
ParA
NACHT
EPF
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
AUJ69919
LinkDB
All DBs
Position
1947309..1948217
Genome browser
AA seq
302 aa
AA seq
DB search
MNNLLPSWHSSALNYLARAQQNGRLHHAQLLSGKKGVGKSLLAAHLAEALLCLHPQNLTA
CGQCKPCNLNLAGNHPDRLSVVPEGKSIGVDEIREITHFLNHSAQQGGNKVALIEHAHLM
THSAANALLKTLEEPNANRYLVVTSDDDSKLPATILSRCNKVAIHSPNQAEAAQWLAAKN
VACDFPWFGEFSLQPFIIEAWQQEGALDDVTALYHAANQLTVESAQTVEKILLKHSAMSD
VFARFLLNRLKGAMTQGNGLSFTQYQDLVSLVHRFMYEQKNVLGLNQNLSISNLLFALQK
QL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttgcttccaagttggcacagcagcgctctaaattatcttgctcgagcacag
caaaacggtcgtttgcaccatgctcagctgttatcgggtaaaaaaggcgtggggaaatct
ctgcttgcggcgcacttggcagaagcactgttatgcttacatccacaaaatcttactgcc
tgtgggcaatgtaagccgtgtaacttgaacttagctggtaatcatcctgatagactgagt
gtagtgcctgaaggaaaatcaatcggggtggacgaaattcgagagattacgcatttcttg
aaccattcagcgcagcaaggtggcaataaagtcgcgttgattgaacacgcgcatttgatg
acccattcagccgctaatgcgctgttaaaaacacttgaagagccaaatgctaatcgttat
ttggtcgttaccagcgatgatgacagtaagttacctgccaccattttgagccgttgtaat
aaagtggcgatccactcgcccaatcaagcagaggccgcgcagtggctggcagctaaaaat
gtcgcttgtgatttcccttggtttggtgaattttctctacagccatttattatcgaagcg
tggcaacaagaaggtgcgcttgatgatgtgactgcgctttatcacgcggcgaatcaatta
acagtagagagtgcgcaaacggttgaaaaaattttgttaaagcacagcgcaatgagtgat
gtattcgcccgttttttgctcaaccgtttaaaaggggcgatgacacaagggaatggtttg
agttttacccagtatcaagacttagtgagcttagtacatcggtttatgtacgaacagaaa
aatgtgttagggttaaatcaaaacctgagcatttctaatttactttttgccttacaaaaa
cagctataa
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