Pseudoalteromonas sp. NC201: PNC201_12450
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Entry
PNC201_12450 CDS
T05464
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNC201_12450 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psen03019
]
PNC201_12450 (deaD)
03009 Ribosome biogenesis [BR:
psen03009
]
PNC201_12450 (deaD)
Enzymes [BR:
psen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNC201_12450 (deaD)
Messenger RNA biogenesis [BR:
psen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PNC201_12450 (deaD)
Ribosome biogenesis [BR:
psen03009
]
Prokaryotic type
rRNA helicases
PNC201_12450 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_22
Cas3-like_C_2
PMC2NT
Motif
Other DBs
NCBI-ProteinID:
AUJ70755
UniProt:
A0A2K9JZ76
LinkDB
All DBs
Position
2891931..2893745
Genome browser
AA seq
604 aa
AA seq
DB search
MSEPVTFESLDLSPAILKAVEEQGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNQVDASVKQPQILVLTPTRELAIQVAEAFQQYAKYTKGVEVLALYGGQSYGIQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSGLNALVLDEADEMLRMGFIDDVESIMEKTPEEK
QTCLFSATMPKQIQSICNKYLDNAEQVKITPRNSTVSTIEQVYWRATAHKNKAIVRFLEA
EDYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKNGLLDIVIAT
DVAARGLDVERLSLVVNYDIPQDCEAYVHRIGRTGRAGRQGKAILFVKNNERYLLKNIMR
HTRSDIAQVELPSAKVVEEKRIGALETKISTALEHKDIEFFSKVASGLAQKLELSQEDLA
AALLCLAQQQTPLKVEDIQIQQRERRERDDRRGERRDRDGSRGERGERKSRSRDRASGPM
DTYRIEVGRDHGVQVKNIVGAIANEADISSKFIGEIRLFNEHSTVQLPQNMPSDVLSHFK
SVHICQRPMNMTKSTHPADQGQGRGEEQRDRKRSFKDPRSGGGDKRRPEGQRREKRERKE
ISFS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagttacgtttgaatctttagacctttcacctgcaatcttaaaagcagtc
gaagagcaaggatataaaacaccttctgagatccaagctcaatgtataccgttattgcta
gaaagaaaagacgtactgggactagcgcagacgggtacaggtaaaacggcagcatttgca
ctgccattgttaaaccaagtagacgcatccgttaaacaaccacaaattcttgtgcttacg
ccaacgcgtgagctggctattcaagttgctgaagcatttcagcaatatgctaaatatact
aaaggcgttgaagtactagcgctttatggtggtcaaagctatggcattcagctaagtgct
ctacgccgtggtgcccaaattattgtggcgacaccaggtcgtttgattgatcacatcaac
cgcaagacgattgacctttctggtctaaacgcacttgtacttgatgaagctgatgaaatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggagaaaacaccggaagagaag
caaacttgtttgttctctgcgactatgcctaagcagatccaatcaatctgtaataaatat
ttagacaatgctgaacaagttaagatcactccgcgtaactctacagtatctacgatcgag
caagtttactggcgtgcaactgcacacaaaaacaaagctatcgtacgtttcttagaagcg
gaagattacgacggtgctatcgtgttcgtacgtacacgtaatgatactgttcagcttgca
gagctactagagcgtgaaggcttctcagctgcaccgctcaacggcgacatgaaccaacag
gcgcgtgagcgcacagtagaccgtcttaagaacggcttgctagatatcgttatcgcaacc
gacgttgcagcacgaggtcttgacgtagaacgtctaagccttgttgttaactacgatatc
ccacaagactgtgaagcttatgttcaccgtatcggtcgtaccggccgtgctggtcgtcaa
ggtaaagcaatcttgttcgttaagaacaacgagcgttatttacttaagaacatcatgcgc
catacgcgctctgatattgcacaggttgaattaccaagtgcgaaagtcgttgaagaaaag
cgtattggtgcattagagactaagatctctacagcgcttgagcacaaagacattgagttc
ttctcaaaagtcgcatcaggccttgcacaaaagctagagctgagccaagaagacttagca
gcagcgctattgtgtcttgcacagcagcaaacgccgctgaaagttgaagatattcaaatt
caacagcgtgagcgtagagaacgtgacgaccgtcgtggcgagcgtcgcgacagagatggt
agccgtggcgagcgtggtgaacgcaaatctcgtagtcgtgaccgtgcatcaggtccaatg
gatacttaccgtatcgaagtaggtcgtgatcatggtgttcaggttaagaacatcgttggt
gctatcgcaaacgaagcggatatctcaagcaagttcatcggtgagatccgtctgttcaat
gaacacagcacggttcaattgccgcaaaatatgccaagtgatgtacttagccacttcaag
agcgtccacatctgtcaacgccctatgaacatgactaagagcactcaccctgccgaccaa
ggtcaaggcagaggcgaagagcaaagagaccgtaagcgtagctttaaagacccacgtagt
ggcggtggtgataaacgccgtcctgaaggtcaaagaagagaaaaacgcgaaagaaaagaa
attagcttttcttaa
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