Pseudoalteromonas sp. NC201: PNC201_13040
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Entry
PNC201_13040 CDS
T05464
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psen
Pseudoalteromonas sp. NC201
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psen03009
]
PNC201_13040 (srmB)
Enzymes [BR:
psen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PNC201_13040 (srmB)
Ribosome biogenesis [BR:
psen03009
]
Prokaryotic type
rRNA helicases
PNC201_13040 (srmB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUJ70868
UniProt:
A0A2K9JZW4
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All DBs
Position
3020385..3021611
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AA seq
408 aa
AA seq
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MQFTEFDLDSKLISAIKKMGFDTPTSIQQMAIPEALIGRDILASAPTGTGKTAAFLIPAI
QYLLDFPRKEPGFARVLIMTPTRELAYQIHEQCELLAAGVNLKIGVVTGGINYGSHKEIF
EKNNDILIATPGRLMEYLETENFHAENVELLILDEADRMLDMGFRKEMLRICSEAVNRRQ
CFLFSATLEGESVEKFAERILQDPALLEATPSRKEKGKIHQWVHLADNYEHKVNLLAQLL
DDEEVTKAVIFVKTRERLETLVGELFAKGIKTTWLRGEMPQDKRMAAMASFHSGKTNILV
ATDVAARGIDVADISHVFNFDMPRTADIYVHRIGRTGRAGKKGTAVSLVEAHDVEILGKV
ERYTDQKLKRRVIKGLEPKHKEAKAPKKKKDPVKIKAKKKAAKVKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttactgaatttgatttagacagcaagctgattagtgcgattaaaaaaatgggt
ttcgatactcccaccagcattcaacagatggctattcctgaagcgctaattggccgagat
attctcgccagcgcaccaaccggtacgggtaaaaccgctgcattcttgatccctgcgatt
cagtatttgcttgatttccctcgcaaagagccaggctttgcccgcgtacttatcatgacg
ccaacgcgtgaacttgcctatcaaatacacgagcaatgtgaactccttgccgcgggtgtt
aaccttaagataggcgtggtaactggcggtattaattacggtagtcacaaagaaatcttc
gaaaagaacaatgatatcctcatcgcaaccccaggtcgtttgatggaatatcttgaaacc
gagaacttccacgcagaaaatgttgagctactgatcttagatgaagcggatcgcatgcta
gacatgggctttcgaaaagaaatgctacgtatttgctctgaagcggttaaccgtcgtcag
tgctttttgttctctgcaacccttgagggcgaaagcgttgagaagtttgctgaacgtata
ctacaagacccagcactacttgaagctacgccatcacgtaaagaaaaaggtaaaattcat
cagtgggttcaccttgcagataactacgagcacaaagtcaatttgctcgcacaactgctt
gatgacgaagaagtaaccaaagcggttatcttcgtaaaaacacgtgagcgcctagaaaca
ctcgttggcgagctatttgccaaaggcattaaaaccacttggctgcgtggtgaaatgcca
caagacaaacgcatggctgcgatggcaagttttcacagtggtaagacgaatatcttagtg
gcaacagatgttgcagcccgtggtatcgacgtagcggatatcagccacgtatttaacttt
gatatgccacgcaccgcagatatttatgtacaccgcatcggtcgtacaggccgtgctggt
aaaaaaggcaccgcggtttctttggttgaagcccacgatgttgaaattttaggtaaggtt
gagcgttacaccgaccaaaaacttaagcgccgtgtaattaaaggcttagaacctaaacac
aaagaagcaaaagcaccgaagaagaaaaaagatccggtgaaaatcaaggcgaaaaagaaa
gccgccaaggttaaaaagaaaaagtaa
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