Pseudoalteromonas sp. NC201: PNC201_22825
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Entry
PNC201_22825 CDS
T05464
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
psen
Pseudoalteromonas sp. NC201
Pathway
psen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PNC201_22825 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psen03000
]
PNC201_22825 (alkA)
03400 DNA repair and recombination proteins [BR:
psen03400
]
PNC201_22825 (alkA)
Enzymes [BR:
psen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PNC201_22825 (alkA)
Transcription factors [BR:
psen03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PNC201_22825 (alkA)
DNA repair and recombination proteins [BR:
psen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PNC201_22825 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_3
HTH_23
Fer4_9
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AUJ72781
LinkDB
All DBs
Position
pNC201:1197142..1198500
Genome browser
AA seq
452 aa
AA seq
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MYTPEVCSQARNSRDARFDGLFFVAVKSTGIYCRPICPAPAAKEKNVEYFQFAHNAAQAG
FRPCIRCRPDSAPGSYAWLGTETTAVRAKKLIDEGALIRHSTEDLADRLGISVRYLNKVF
NQYFGTSPKQYALYKQCDLAKQLLQQSDLPVTQVAFAAGFNSLRRFNDAFQKLYQLSPSQ
LRRDAGSGSAIAIYLSYRPPYNWDKMQQFLAMRIVPGIEWLTENGYGRTVMIEGETGRFT
ATIEPEKHRFKVVIALCDLSLLVPMIAQIRRVLDLDADTCFIESHLHEAAPDLPLQEGLR
LPGIWSEFEAGMRAILGQQISVQAARNLLALLVETLGEVAEDGMRYFPKPKAVFDSDLAF
FKMPERRKAAIKAFAEQYVGSEHVELDDWLNIKGIGPWTVDYAKMRGLSHPDIYLGGDLG
VKKAMEKSLKTIDIEKCAPFRSYLTFQLWQQL
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaccagaagtttgttctcaagctagaaatagtcgcgatgctagatttgatggg
ttgttttttgttgcggtaaagagcaccggcatttattgtcggccaatatgtccagcacct
gctgcaaaagaaaaaaatgttgagtattttcaatttgcccacaatgcagcgcaagctggc
tttagaccttgtattcgctgccgccctgacagcgcaccgggtagttatgcatggcttggc
acggaaacaaccgcagtcagagccaaaaagttaatcgacgagggggccttgatacgtcat
tcgacagaagacttagccgataggttaggcatttcggtccgttatttaaataaagtattc
aatcaatattttggcaccagccccaaacaatatgcactttataagcaatgtgacttagct
aagcagctattacagcaaagtgaccttcctgtcacgcaagtcgcgtttgccgccgggttt
aattcattgcgacgctttaatgatgcattccagaaactgtatcagttatcaccaagtcaa
ctcagaagagacgcaggtagtggctcagccattgcgatttacttgtcttatcgaccaccg
tacaactgggataaaatgcagcagtttttagcaatgagaattgtgccaggtatcgagtgg
ttaacagaaaacggttatgggcgaaccgtgatgatagaaggggaaacagggcgcttcacc
gcgactatcgagcctgaaaaacatcgctttaaagtggttatcgcgctctgtgatttatcc
ttgttagttccgatgattgcgcagatcaggcgtgtgttagatttggatgcggatacctgt
tttattgagtctcaccttcatgaagccgcacctgatttgccgctacaagagggactcaga
ttacctgggatctggagtgagtttgaagcgggaatgagagctattttaggtcaacaaatc
agtgttcaagcggcgagaaacttacttgctttattggttgaaacacttggtgaggtagct
gaagatggcatgcgttacttccctaagcctaaggccgtatttgatagtgatctcgccttt
ttcaaaatgcctgagcggagaaaagcggctattaaagctttcgctgagcaatatgttggt
tcggaacatgttgaacttgatgactggttaaatattaaagggataggcccttggactgtc
gactatgcaaaaatgcgcggattgagtcacccagacatttacttgggtggtgatttgggt
gtcaaaaaggcaatggaaaaatccttaaaaacaatagatatcgaaaagtgtgctcctttt
cgttcttatttaacttttcaactatggcaacaattatga
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