Pseudoalteromonas piratica: OM33_01025
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Entry
OM33_01025 CDS
T03513
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM33_01025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseo03019
]
OM33_01025
03400 DNA repair and recombination proteins [BR:
pseo03400
]
OM33_01025
Enzymes [BR:
pseo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OM33_01025
Messenger RNA biogenesis [BR:
pseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM33_01025
DNA repair and recombination proteins [BR:
pseo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OM33_01025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIY66243
UniProt:
A0A0A7EI76
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All DBs
Position
1:242928..244724
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AA seq
598 aa
AA seq
DB search
MAEHNNPHAILNSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCYQVPALLLPG
ITIVVSPLISLMQDQVAQLKAQGVAAAYINQSQSREEQQQIYQGLHQGQIKILYVAPERL
LTDDFLMRLQHLQISLFAIDEAHCVSHWGHDFRPHYYRLGQLKQHFSHIPVMALTATADI
ATRTDIVMQLGLVDAHIYTGSFDRPNIRYTIEEKFKPLSQLMRFLKEQKGQSGIIYCSSR
KRVDDIAEKLVDAGYNAASYHAGLENEQRTFVQNAFARDDIHIVVATVAFGMGINKPNVR
FVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFDPADVPRVKRFFDDIPDEQRRKVEEQ
RFNAMASFAEAQTCRRQILLNYFSEYQGKPCGNCDICLNPPKQFNGTELAQKALSCVYRV
EQKFGLGYVIDVLRGANTIRIRENQHDQLSTFGLGKDKSVEYWLSILRQLIHHGLLHQDI
TQSSSLRLTEAARPVLKGEFQLQLAEPRLEVKHVYKDKLARFNYDKQLFAKLRGLRKELA
DAEDVPPYVVFSDATLAEMAQLMPTNDAEFLKVSGVGFTKLNKYGAYFMNAIRNHLTS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
attgccgaacacaataacccgcacgcgatattgaattcagtgttcggttataaacagttt
cgcgctggacaagaacaagttatcgacgctgtgctagctggccaagattgcttggtatta
atgccaaccggtggcggaaaatcattatgttatcaagtgcccgcattattacttcccggc
atcactattgtcgtgtcaccgcttatttccctaatgcaagatcaagttgctcaattaaaa
gcacaaggtgttgcggctgcttatatcaaccagagtcaatcgcgagaagaacaacagcag
atttatcaaggcttacaccaagggcaaataaaaatcctgtatgtcgcaccagaacgtctg
ttaacagatgactttctcatgcgattgcaacatttacagatcagcttatttgctatcgat
gaggcgcactgtgtatcacattggggtcatgattttcgaccacactactatcgtttaggg
cagttaaaacagcattttagccatatacctgtgatggcgctcaccgcgaccgcagatata
gccacacgcactgatattgtgatgcaactaggcttagtagatgcacatatttacacaggc
agctttgaccgccctaatattcgttacacgatagaagaaaagtttaagccattgagtcag
ctaatgcgctttttaaaagagcaaaaagggcaaagcggtattatctattgttctagtcgc
aagcgtgttgacgacatcgctgagaagttggttgatgcgggctataacgcagcatcttat
cacgcgggacttgaaaatgagcaacgcacatttgtgcaaaatgcatttgcccgtgatgat
attcatattgtggtggcaactgtcgcttttggcatggggattaataaacccaacgtgcgt
tttgttattcattacgacattcctaaaaacatcgaatcttattatcaagaaactggtcgc
gctggccgggatggtttatctgctgaagcgattatgtattttgacccagcggatgtacct
cgtgttaaacgtttttttgatgacattcccgatgagcaacgtcgtaaggtagaagagcaa
cgctttaacgccatggcaagctttgctgaggcacaaacttgtcgccgccaaatattgctt
aactatttttctgaatatcaaggaaaaccctgcggtaactgcgatatttgcttaaatccg
ccgaaacagtttaatggtacagagctcgctcaaaaagccttaagttgtgtttaccgtgtt
gagcaaaaatttggcttaggctacgtgattgatgtgttacgcggtgccaataccattcgc
atccgtgaaaaccaacatgatcaactatcaacatttggcctgggtaaagataagtcagtt
gagtattggctgagtattttacgccaactgatacatcatggtttactgcaccaagacatt
acgcaatcatcgagcttacgcttaaccgaagctgcacgaccggttctaaaaggtgaattt
caacttcaattagctgaacctcgactcgaagtgaaacacgtttacaaagataaacttgca
cgctttaactacgacaaacaactgtttgccaaactacgaggtctgcgtaaagagttagcc
gatgctgaagatgtgccaccttatgttgttttcagcgacgcgacacttgctgagatggcg
caactcatgccaacaaacgacgcagaatttttaaaagtatcgggcgttggttttaccaag
ttaaacaaatatggcgcctactttatgaatgccattcgtaaccatttaaccagttaa
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