Pseudoalteromonas piratica: OM33_03880
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Entry
OM33_03880 CDS
T03513
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OM33_03880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pseo03021
]
OM33_03880
03400 DNA repair and recombination proteins [BR:
pseo03400
]
OM33_03880
Enzymes [BR:
pseo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OM33_03880
Transcription machinery [BR:
pseo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OM33_03880
DNA repair and recombination proteins [BR:
pseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OM33_03880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIY64384
UniProt:
A0A0A7ECR9
LinkDB
All DBs
Position
1:856321..860496
Genome browser
AA seq
1391 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRDLDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINANGEGLVFKDAKEAEKAYRTG
VADLHARVKVRLTETVISEEGDKSEITHLVETTVGRAIFSLIMPEGLPFELVNKAMGKKQ
ISGLLNECYRRLGLKDTVVFADQVMYTGFHYAMKSGVSIGINDMEIPPVKAEIIDAAEAE
VNEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAEGVEEEQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEQDCGTEDGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTEEVLVERNVMLDEKLCDLLEENSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHLINPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNNGSLKL
HNAKYVLNSDGKIVITSRSTEITVIDEHGREKERYKVPYGAVLSVQDGAEVAGNDIVATW
DPHSHPIIVEHESKVQFSDIDDSNVESQTDELTGLTRMVVKDLAKVNAKEPKLIIENDER
GLQEIRIPSFTTIEVTDGSTVAAGAVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTVSFGKETKGKKRLVITPEQGDAYEEMIPKWRQLNVFEGESVSKGEVIADGPE
SPHDILRLRGVTDVANYIVNEVQEVYRLQGVKINDKHIETIIRQMIRKCIILDGGDTEFL
AGEQVEVARVNIANRDLEEQGKIPAKYEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRINRRKQGESVEEQTVSVDEASQALTD
ALNAGIEGEQE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaacaagaccgaagagtttgatgcgatc
cgcatcggtctagcttcgccagatatggtacgttcatggtcattcggtgaagtaaagaaa
cctgagacaatcaactaccgtactttcaagcctgagcgcgacggcttattctgtgctcgt
attttcggcccagtaaaagactatgagtgtttatgtggtaaatataagcgcttaaagcac
cgtggtgttatttgtgaaaagtgtggcgtagaagttacattaactaaggttcgtcgtgac
cgtatgggtcatatcgagctagctagccctgtagcgcacatttggttccttaaatcatta
ccgtctcgtatcggcttaatgttagacatgacattacgtgatatcgaacgtgtactttac
ttcgaatcattcgtagtaacagagccaggtatgacaacgcttgagcgtggtcagctatta
ggtgaagaagaatacctagatgcattagaagaacacggtgacgagttcgaagctaagatg
ggtgcagaagctgtacttgatttacttcgtgacctagaccttggtcagctaattgcagaa
atgcgcgaagagttaccaacaattaactctgaaactaagcgtaagaagatcactaagcgt
cttaagctgatggaatcattccaccaatcaggtaacaaccctgagtggatgatcatgact
gtattaccagttcttccaccagatctacgtccactagtaccactagatggcggtcgtttt
gctacatctgatctgaacgatttataccgtcgtgtaatcaaccgtaacaaccgtctgaag
cgtcttttagacttagctgcaccagacattatcgtacgcaacgaaaagcgtatgttacaa
gaagcggtagatgcactacttgataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggtcgttctgtaatcactgtaggtcctaca
ctgaaactacaccagtgtggtcttcctaagaaaatggcactcgagctattcaagccattt
atctacggtaaattagagcgccgcggtatggcgactactatcaaagctgcgaagaagatg
gtagagcgtgaagtaccggaagtttgggatatccttgatgaagtaattcgtgagcacccg
gttctacttaaccgtgcacctacacttcaccgtcttggtatccaggcgtttgaaccagta
ttaatcgaaggtaaagcgattcacctacacccattagtgtgtgcggcatataacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacattagaagcacagctagaagca
cgtgcactaatgatgtcaaccaacaacattctttcaccagcgaacggtgagccaatcatc
gtaccctcacaggacgttgtattaggtctttactacatgacgcgtgatcgcatcaatgcg
aacggtgaaggtttagtattcaaagacgcgaaagaagctgagaaagcataccgcacaggt
gttgctgacttacatgcacgcgttaaagttcgtttaactgaaacggttatcagcgaagaa
ggcgacaagagcgaaattacacacctagttgaaacaacagtaggtcgtgcgattttctca
cttatcatgcctgaaggcttaccatttgagcttgttaacaaggcaatgggtaagaagcag
atttcaggtcttcttaacgagtgttaccgtcgtctaggtctaaaagacactgtagtgttt
gctgaccaagtaatgtacacaggtttccactacgcgatgaagtcgggtgtttctatcggt
attaacgatatggaaatcccaccagttaaagctgaaatcatcgacgctgctgaagcagaa
gttaacgaaatcaaccaacagttccagtcaggtcttgtaactgcgggtgaaaagtacaac
aaagttatcgatatctggtcacgtgtaaatgaaaacttgtcacgtgaaatgatggcaaac
ttatcaaaagatactgtaatcaacgctgaaggtgttgaggaagagcaagactcattcaac
tcagtatttatgatggccgactcaggtgcacgtggtagcgccgctcagatccgtcagtta
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgaaacaccaatcacg
gcgaacttccgtgaaggtctaaacgtactacagtacttcatctcgacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaagacagcgaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagacttagtaatcaacgagcaagactgtggtactgaagatggtcta
acaatgaagccgctaattgaaggtggtgacgttgttgagccgctacgcgagcgtgtatta
ggtcgtgtagttgctgaagacgtattaaaaccaggtactgaagaagtacttgttgagcgt
aacgtaatgcttgacgaaaaactgtgtgaccttctagaagagaactcagtggacgaagta
cgcgtacgttcagttatcacatgtgataacgacttcggtgtatgtgctaactgttacggt
cgtgaccttgcacgtggtcacctaatcaacccaggtgaatcagtaggtgttatcgcagct
caatcaatcggtgagccgggtactcagcttacgatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgcagagaacagtgtacaagttaagaacaacggtagcttaaagctg
cataacgcaaaatacgttcttaattcagacggcaagattgtaatcacatctcgttcaact
gaaatcacagttatcgatgagcacggtcgtgagaaagagcgttataaagtaccttacggt
gcggttctttcagttcaagatggtgctgaagttgctggtaacgatatcgttgcgacatgg
gatccgcatagtcacccaattattgttgaacacgaatcaaaagttcagttcagcgacatt
gatgactcaaacgtagagtcgcaaacagacgaactaactggtcttacgcgtatggttgtt
aaagacctagcgaaagttaacgcgaaagagcctaagttaatcatcgaaaatgatgagcgc
ggtcttcaagaaatccgtattccttcattcactactattgaagtgactgatggttcaacg
gttgcggctggtgcagtattagcgcgtatcccgcaagaaggttcgaagactcgtgatatc
accggtggtctacctcgagttgctgacttatttgaagcgcgtaagccgaaagatccagca
attcttgcagaaatcacaggtactgttagtttcggtaaagaaactaaaggtaagaaacgc
ttagttattacaccagagcaaggtgatgcatacgaagagatgattccgaaatggcgtcag
cttaacgtattcgaaggtgaatcagtatcgaaaggtgaagttatcgccgacggtccagag
tcaccacacgatatccttcgcctacgtggtgtaactgatgttgctaactacatcgtaaac
gaagtacaagaagtataccgtttacagggtgtaaaaattaacgataagcacatcgaaact
atcattcgtcagatgatccgtaagtgcatcatcctagacggtggtgatacagaattccta
gcaggtgaacaagttgaagtggcgcgcgtaaatatcgcaaaccgtgatcttgaagagcaa
ggtaagatcccagctaaatatgaaattcagctaatgggtattactaaagcatcacttgcg
acagaatcattcatttctgcagcatcattccaggagacaactcgtgttcttactgatgca
gctgtaaatggtaagagcgatgaattacgtggtctgaaagaaaacgtaattgtaggtcgc
ttgattccggcgggtactggttttgcctaccaccaagaccgtatcaatcgtcgcaaacaa
ggtgaaagtgttgaagagcaaacagtaagtgttgatgaagcatcacaagcactaactgat
gcgcttaatgctggcatcgaaggcgagcaagaataa
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