KEGG   Pseudoalteromonas piratica: OM33_05465
Entry
OM33_05465        CDS       T03513                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pseo  Pseudoalteromonas piratica
Pathway
pseo02024  Quorum sensing
pseo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pseo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OM33_05465
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OM33_05465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pseo03019]
    OM33_05465
   03036 Chromosome and associated proteins [BR:pseo03036]
    OM33_05465
Messenger RNA biogenesis [BR:pseo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OM33_05465
Chromosome and associated proteins [BR:pseo03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OM33_05465
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AIY64650
UniProt: A0A0A7EDC8
LinkDB
Position
1:1211960..1212211
AA seq 83 aa
MAKGQSLQDPFLNALRRERIPVAIYLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQATQGSEDESGNY
NT seq 252 nt   +upstreamnt  +downstreamnt
atggcaaaaggccaatcattacaagacccatttttaaacgcgttacgtcgtgaacgtatt
cctgttgcaatctatttagttaacggtattaagcttcagggtaaaattcagtcatttgac
cagtttgtgatcttattagaaaacacagtaaaccaaatggtttataaacacgctatttca
actgttgttcctgctcgtgcggttaacttccaagcgacgcaaggttcagaagacgagagc
ggtaactactaa

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