Pseudoalteromonas piratica: OM33_05465
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Entry
OM33_05465 CDS
T03513
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo02024
Quorum sensing
pseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM33_05465
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OM33_05465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseo03019
]
OM33_05465
03036 Chromosome and associated proteins [BR:
pseo03036
]
OM33_05465
Messenger RNA biogenesis [BR:
pseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
OM33_05465
Chromosome and associated proteins [BR:
pseo03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
OM33_05465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AIY64650
UniProt:
A0A0A7EDC8
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All DBs
Position
1:1211960..1212211
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AA seq
83 aa
AA seq
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MAKGQSLQDPFLNALRRERIPVAIYLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQATQGSEDESGNY
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggccaatcattacaagacccatttttaaacgcgttacgtcgtgaacgtatt
cctgttgcaatctatttagttaacggtattaagcttcagggtaaaattcagtcatttgac
cagtttgtgatcttattagaaaacacagtaaaccaaatggtttataaacacgctatttca
actgttgttcctgctcgtgcggttaacttccaagcgacgcaaggttcagaagacgagagc
ggtaactactaa
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