Pseudoalteromonas piratica: OM33_12125
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Entry
OM33_12125 CDS
T03513
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OM33_12125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseo03400
]
OM33_12125
DNA repair and recombination proteins [BR:
pseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OM33_12125
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OM33_12125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
AAA
Kinesin
SLFN-g3_helicase
AAA_5
UB2H
DUF87
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AIY65808
UniProt:
A0A0A7EGY6
LinkDB
All DBs
Position
1:complement(2614603..2616618)
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AA seq
671 aa
AA seq
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MSKDGVTDFKLVSPFKPSGDQPTAITQLVDGLEAGLAHQTLLGATGTGKTFTMANVIAEL
NRPTIILAHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVVASDTFIEKDASIN
DHIEQMRLSATKALLERKDVIIVASVSAIYGLGDPDSYLKMMLLIKQGDTVDQRDLLRRL
AELQYTRNDIDFQRGTYRVRGEVIDIFPAESETMAIRVEMFDDEVDRLSIFDPLTGAVER
HIIRATIYPKTHYVTPREKILAAIDNIKEELKIRRKQLLDNNRLVEEQRVAQRTQYDIEM
MSELGYCSGIENYSRYLSGRAPGEPPPTLLDYLPDEALMIIDESHVTVSQVGAMYRGDRS
RKENLVEYGFRLPSALDNRPLKFEEFEAISPQTIYVSATPGDYELERSNNEVAEQVIRPT
GLLDPELEIRPVATQVDDLLSEIYKRVELNERVLVTTLTKRMAEDLSDYLNDHDVKVRYL
HSDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLI
QTIGRAARHINGRAILYADRITDSMKRAIDETERRRSIQHQYNIDNGITPQALNKKITDI
MDVGEQVDEKDTKQRKSPTAINKEILSADEINKKIKQLESDMLAFARDLEFEKAAKVRDE
IQQLHQELINA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagatggagtaactgattttaaattagtatcgccttttaaacccagtggtgat
caaccaactgctatcacacaattagtggatggtttagaagcgggccttgcccaccaaacc
ttgttgggcgcaacgggtacaggtaaaacctttaccatggctaatgttatcgcagagcta
aatcgcccaaccattattttggcacataacaaaacgcttgcagctcagctttatggtgaa
atgaaagagtttttcccagaaaatgcggtagagtactttgtatcttactacgattattac
caaccagaagcctatgtcgttgcaagcgatacctttatcgaaaaagatgcttcaataaac
gatcacatagagcaaatgcgtttatcagccaccaaggctttattggaacgcaaagacgtt
attattgttgcatcagtgtctgctatttatggtttaggcgatcctgattcttatttaaag
atgatgttgctaatcaaacagggcgatacggttgatcagcgagacttactgcgcaggctg
gcagagttgcaatacacacgcaatgatatcgactttcaacgcggtacgtatcgagtgcgt
ggtgaagtcattgatattttccctgctgaatctgaaaccatggcaattcgggttgaaatg
tttgacgatgaagtggataggctgagcatttttgatccgctcactggtgcggtggagagg
catattattcgcgccacgatttatcctaaaactcactatgttacgccgcgcgaaaagatt
ttagcggccattgacaatattaaagaagaactcaagatccgccgtaaacagctgcttgat
aataaccgtttagtcgaagaacaaagggttgcacagcgcacccaatacgatattgaaatg
atgagtgaattggggtactgctctggtatcgaaaactactcgcgttatttatctggtaga
gcacctggcgagccaccaccaacgttgcttgattatttacctgatgaagctttgatgata
attgatgaatcacacgttacagtatcgcaggtgggtgcgatgtatcgtggtgaccgcagc
cgaaaagaaaacttagttgaatatggttttcgtctgccatcagcgcttgataaccgtcca
ttgaagtttgaagaatttgaagcgatttcaccgcaaaccatttatgtgtcagcgacccca
ggggattacgaattagagcgctctaataacgaagtggcagagcaagtgattcgtccaaca
ggcttactcgatcctgagctcgaaattcgccctgtagccacgcaagttgatgatttgctc
tctgagatttacaaacgtgttgaacttaatgaacgcgtgttggttacaacgcttactaaa
cgcatggctgaagacttatctgattacttgaacgatcatgatgtcaaagtacgctatctg
cattcagatatagataccgttgaacgtgttgagattattcgtgacttacgtgccggtgtg
tttgatgtgttggtaggtattaaccttcttcgtgaaggcttagacatgccagaagtgtct
cttgttgctattttagatgccgacaaggaaggtttcttacgctcaacgcgatctcttatt
cagacgatagggcgtgccgcgcgtcatattaatggccgtgccattttatatgctgacaga
attacagattcaatgaaacgcgcgattgatgaaactgaacgtcgccgcagcattcagcat
cagtacaatattgataatggcattacgccacaggctctcaataagaaaatcactgatatt
atggatgtcggcgaacaagttgacgaaaaagacactaagcaacgtaagtcgcccacagcg
attaacaaagaaattttatctgcggatgaaattaataagaaaattaaacaactggaatct
gacatgttggcgtttgcgcgcgaccttgaatttgaaaaggcggcaaaagtacgtgatgag
atccagcaactacatcaagaactaattaatgcctaa
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integrated database retrieval system
