Pseudoalteromonas piratica: OM33_12410
Help
Entry
OM33_12410 CDS
T03513
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM33_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseo03019
]
OM33_12410
03016 Transfer RNA biogenesis [BR:
pseo03016
]
OM33_12410
Enzymes [BR:
pseo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OM33_12410
Messenger RNA biogenesis [BR:
pseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OM33_12410
Transfer RNA biogenesis [BR:
pseo03016
]
Prokaryotic type
tRNA degradation factors
OM33_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
S1_2
KH-I_KHDC4-BBP
KH_KhpA-B
CsrA
KH_SLS1_2
aRib
Motif
Other DBs
NCBI-ProteinID:
AIY65842
UniProt:
A0A0A7EIN6
LinkDB
All DBs
Position
1:complement(2662194..2664323)
Genome browser
AA seq
709 aa
AA seq
DB search
MQPIIKKFQFGQHEVTLETGAVARQADAAVIASIGDTAVLVSVVGKRDAAPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSID
PEIKPDIVTLIGTSAALAISGIPFNGPLGAARVGYINDQYVLNPSSTELETSKLDLVVAG
TENAVLMVESEAEVLSEDIMLGAVVYGHEQSQAAIQAIKEFQAEAGKPAWDWTAPEKNVT
LADKIAVIAEEKVGAAYLITDKVERKEAISAAKAEVVEKLTAELAEDESLDEQEVGKLFG
SLEKKIVRGRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDAQMIDDLTGTKTDRFMLHYNFPPYCVGETGFVGSPKRREIGHGNLAKRGIAAVMPSL
EEFPYSVRVVSEITESNGSSSMASVCGTSLALMNAGVPTKASVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGSSEGVTALQMDIKIEGINKEIMQIALNQAKAARMHILSVMD
QAIDKPSEELSEFAPRIYTVNIPPKKIADVIGKGGATIRALTEETGTTIEIEDDGTVKIA
ATNGESARAAIARVEQLTAELEVGTIYSGKVVRIVDFGAFVNVLPGKDGLVHISQISEER
VNNVADHLKVGDEVQVKVLEVDRQGRVRLSIKEAMKKDEAPAEEKASEE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaattattaaaaaatttcagtttggtcaacacgaagtgaccttagagacgggt
gcagttgctcgtcaagcagatgctgcggtaatcgcaagcattggtgatacagcagtactt
gtatcagtagtaggtaagcgtgatgcagcgcctggtcaagatttcttcccactaacagtt
aactaccaagagcgtatgtacgctgcaggtcgtatcccaggtggtttccttaagcgtgaa
ggtcgtccaagcgatggcgaaacactaacggcacgtctaattgaccgtccaattcgtcca
cttttccctgacggtttcgtaaacgaagttcaggttattgcgacagttgtttcaattgac
ccagaaatcaagccagatatcgtaacattaatcggtacatcggctgcgttagctatttca
ggtattccatttaatggcccactaggtgcagcgcgcgttggttatatcaatgaccagtac
gttctaaacccttcttcaactgagctagaaacaagtaaacttgacctagttgttgcaggt
actgaaaacgcagtattgatggttgaatcagaagctgaagtgctttctgaagacattatg
cttggtgcggtggtatacggccacgagcaatcacaagcggcaattcaagctatcaaagaa
ttccaagctgaagcaggtaaaccagcatgggattggacagcaccagagaagaacgtaaca
cttgctgataaaattgctgtaattgcagaagagaaagtaggcgcggcttacttaatcact
gacaaggttgagcgtaaagaagcaatctctgctgctaaagctgaagtagttgaaaaacta
acagctgaacttgcagaagacgaatcactagacgagcaagaagtaggtaaactattcggt
tctctagagaagaaaatcgtacgtggccgcatcattgctggcgaaaagcgtatcgatggt
cgtgaaccagacatggttcgtgcactagacgtaatgacgggtgtacttcctcgtactcac
ggttcagctatcttcactcgtggtgaaacgcaagcacttgtaacagcaacacttggtaca
gagcgtgatgcacaaatgatcgacgacctaacaggtactaagactgatcgttttatgctt
cactataacttccctccatactgtgtgggtgaaactggttttgttggttcacctaagcgt
cgtgaaatcggtcacggtaacctagcgaagcgtggtattgcagcagtaatgccaagcctt
gaagaattcccgtactcagttcgtgtggtttcagaaatcactgaatcaaacggttcttct
tcaatggcttcagtatgtggtacgtcacttgcgcttatgaatgcaggtgtaccaactaaa
gcttctgtagctggtatcgcaatgggtctagtgaaagaaggcgacgacttcgttgttctt
tcagacatcttaggtgatgaagatcacttaggtgatatggactttaaagtagcaggttca
tctgaaggtgtaactgcactacaaatggatatcaagattgaaggtatcaacaaagaaatc
atgcaaatcgcgcttaaccaagcgaaagcggcacgtatgcacattctttctgtaatggac
caagcaatcgacaagccaagcgaagagctttctgaatttgcaccgcgtatctacacagta
aacattccacctaagaaaattgctgacgttatcggtaaaggtggcgcgacaatccgtgca
cttactgaagaaacaggtactacaattgaaattgaagacgacggtacagttaagattgct
gcaacaaatggcgaaagtgcacgcgctgcaatcgcccgcgttgagcagttaacagctgaa
cttgaagtaggcactatctactcaggtaaagttgtgcgtatcgtagacttcggtgcattt
gttaacgtacttccaggtaaagatggcctagtgcacatttcacaaatcagcgaagaacgt
gtaaacaacgttgctgaccacctgaaagtgggcgatgaagtacaagttaaagtactagaa
gttgaccgccaaggtcgtgtacgtctaagcatcaaagaagcgatgaagaaagacgaagca
ccagctgaagaaaaagcatcagaagaataa
DBGET
integrated database retrieval system
