Pseudoalteromonas piratica: OM33_12465
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Entry
OM33_12465 CDS
T03513
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM33_12465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseo03019
]
OM33_12465
03400 DNA repair and recombination proteins [BR:
pseo03400
]
OM33_12465
Enzymes [BR:
pseo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OM33_12465
Messenger RNA biogenesis [BR:
pseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM33_12465
DNA repair and recombination proteins [BR:
pseo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OM33_12465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_22
TniB
DUF2685
Motif
Other DBs
NCBI-ProteinID:
AIY65851
UniProt:
A0A0A7EIG1
LinkDB
All DBs
Position
1:complement(2674497..2676434)
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AA seq
645 aa
AA seq
DB search
MNQTQLQQALKHHFNFDVFREGQAQTISQLLSGHSSLAVFPTGSGKSLCYQLTALLLPHL
TLVVSPLLALMKDQVDFLNSKGIAAASLDSSLDKDSYFDVVNRVRQGEIKILMVSVERFK
NERFRQFINTVAISMLVVDEAHCISEWGHNFRPDYLKLPQYRTDLNIPLVLLLTATATKK
VKLDMASKFAIDEAHIVQTGFYRQNLDLSVIPALAGQKESQLIDLIRSQNGCGIVYVTLQ
QTAESIAEELRQAGINAVAYHAGLGSDVRQQLQNQFMQSNSQVVVATIAFGMGIDKSDIR
FVVHFDLPKSIENYSQEIGRAGRDGLPSNCFVLGNLDDITTLENFVYGDTPEKSSLERFF
ADIRDNTQDSLWQCQIYSLLQSTNIRQLTLKTLLVQCELLGVLEPKYSYFAEYRYYFKLD
RAEVLNKFNTERQAFLNQLFDATDFKKKWGSIDVNEFALQAGLERARVLSALEYLHEQGD
IELESKQLIDVYQVDTSKLANSELIPQLASYFLSNEKSEVGRINTMLRYFQLDTCLSYNL
ARYFDDQGAPQQCGHCSVCRGKVAQLQYIDTQKQVVEGQIHDYLAPLDIALSGQGVTLSD
TLAVRFLLGLTQPVFTKVKASKMAGYAVFDSVPFTTVKKAVEQNR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaacacaactgcagcaagcccttaaacaccattttaattttgatgtgttccgt
gaaggacaagcgcaaactatttcacagttgttgtcaggacattctagtcttgcggtattt
cccaccggctcaggtaagtcattgtgttatcagctaactgcgcttttattaccgcattta
actttggtggtgtcgccgttgcttgccttgatgaaagatcaagtggactttttaaatagt
aaaggtatcgctgcggccagtttagattcaagcctcgataaagacagttactttgatgtg
gttaatcgcgttaggcaaggtgagattaaaattttaatggtatcggtcgagcgttttaag
aatgagcgttttagacagtttattaacacggttgccatttctatgttagtggttgatgag
gcccattgtatttcagaatggggacataactttaggccagattacttaaaattgcctcag
taccgaactgacttaaacattcctttggtgttgctattaactgcgacagccactaaaaaa
gtgaagttggatatggccagtaaatttgcgatagatgaagcacatatcgtgcaaactggc
ttttatcgccagaatttagatttatcggttattcctgcattggcaggacaaaaagagtcg
caattaattgatcttattcgctcacaaaatggctgtggcattgtgtatgttacgttacaa
caaaccgctgaaagtattgcagaagaattgaggcaagctggcattaatgctgtggcctat
catgcagggcttggcagtgatgtgcgtcagcaattacaaaaccagtttatgcaaagcaat
agccaagtggtcgtggcgacgattgcctttggtatgggtattgataaaagtgacattcgc
tttgtggtgcatttcgatttaccaaaatcaatcgaaaattactcgcaagaaataggccgt
gcagggcgtgatggcttgccatccaactgttttgtattaggtaatttggatgacatcacc
acgcttgaaaactttgtttatggcgatactcctgagaaatcaagcttagagcgttttttc
gctgatattcgtgacaatacgcaagattctttgtggcaatgccaaatttattccttgttg
caatcgactaatattcgtcaattgacgctaaaaacattactcgtgcaatgtgaattactt
ggtgtactggaaccgaagtacagctactttgctgaatatcgctattattttaaattagat
cgtgcagaggttttaaataaattcaacacagagcgccaagccttcctgaatcagttattt
gatgcaaccgattttaagaaaaagtggggcagtattgatgtcaacgaatttgcattgcaa
gcgggacttgaacgtgcacgggtgttatcggcacttgaataccttcatgagcagggcgat
attgaacttgaaagtaaacagcttattgatgtttatcaagtggatacatcaaagcttgca
aattcagagctgataccgcagttagcttcgtactttttaagcaatgaaaaaagcgaagtt
ggccgcatcaataccatgctgcgttattttcagttagatacctgtttaagttacaactta
gcccgttattttgatgaccaaggtgcgccacagcagtgtggacattgcagtgtgtgccgt
gggaaagtcgctcaattgcaatacatcgatacacaaaagcaagtagttgaaggtcaaata
catgactatttagcaccgttagatattgccctaagtggacagggggtcacattaagcgac
accctagcagtacggtttttactaggcttaacccagcctgtatttacaaaagtaaaagcg
tcgaaaatggcagggtatgcagtattcgattctgtaccgtttacaacggtgaaaaaggca
gttgagcaaaaccgctaa
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