Pseudoalteromonas piratica: OM33_18530
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Entry
OM33_18530 CDS
T03513
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pseo
Pseudoalteromonas piratica
Pathway
pseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM33_18530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseo03019
]
OM33_18530
03009 Ribosome biogenesis [BR:
pseo03009
]
OM33_18530
Enzymes [BR:
pseo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OM33_18530
Messenger RNA biogenesis [BR:
pseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM33_18530
Ribosome biogenesis [BR:
pseo03009
]
Prokaryotic type
rRNA helicases
OM33_18530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIY67071
UniProt:
A0A0A7ELX9
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All DBs
Position
2:complement(846183..847991)
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AA seq
602 aa
AA seq
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MSNDKILFEELSLPTPILSAITELGFVEPTPIQQQSIPALLAGNDVLGEAQTGTGKTAAF
GLPLLARIDENINAPQMLVVCPTRELAIQVAEAITDFAKNIRGINVATVYGGQSYTIQNR
DLKRGPQIVVGTPGRMMDHIEKGRLNLDNLKACVLDEADEMLNMGFLDDIEWILDHVPED
TQMAFFSATMPAPIKKITSQFLTDPVHVKIAVEKQAKANITQRAWRVGAIGKTAGLERIA
EVVDYDAMIVFVRTRNDTLTLSEHLVSKGFKAAALNGDMQQQDRERIVDQLKNGRIHILI
ATDVVARGLDVPRISHVINYDLPFDSESYVHRIGRTGRAGREGEAILFASHREMRLLNRL
ERATEGQITPFDMPDASQLSKHRIEKTKEKLVSVAASPNLEKYAEVLAKFTEETEITTEQ
LAAAMLYQLQQKLPLFPQADPVDKRGERRGRDGMRNDRGDRRGREGGRERRNSGDFATYK
FAVGRAQGVKPSDIVGAIANEVRINSREIGNIKLFDNHCHVELPKSLPGQGFEKLKNVTI
RRHKINPSLVEGASHSSGYDSENRGKRPPRKRERFNDDRSMKTFKKKSNKPRREERSVPT
FN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgacaaaattttattcgaagaactatcccttcctacccctatccttagcgcg
attacagaacttggttttgtagagcctacaccgattcaacaacagtctattccggcgtta
cttgcaggcaatgatgtacttggcgaagcacaaacaggtacaggtaaaacagctgcattc
ggtttaccattgcttgctcgtattgatgaaaatataaatgcaccacaaatgcttgtggta
tgtcctacacgtgagcttgctattcaggtagcagaagcaattacagattttgctaaaaac
attcgtggtattaatgtagcgactgtttatggtggtcaatcttatacaattcaaaaccgc
gatttaaaacgtggtccacaaattgtagttggcacaccaggccgcatgatggatcacatt
gagaaaggtcgtttaaatttagataaccttaaagcatgtgttctagatgaagctgatgaa
atgcttaacatgggcttcttagacgatattgagtggatccttgatcacgttcctgaagac
actcagatggcgtttttctcagcaacaatgccggcgccaattaaaaaaattacatcacag
ttcttaactgatcctgtacatgtaaaaattgctgttgaaaaacaagcaaaagcaaacatt
acacaacgcgcatggcgtgttggcgcaatcggtaaaacagctggtcttgagcgcattgct
gaagttgtagattatgatgcaatgattgtatttgttcgtactcgtaacgacacactaacg
ttaagcgaacacctagtaagcaaaggctttaaagctgcggctttaaatggtgacatgcaa
cagcaagatcgtgagcgtattgtagaccaacttaaaaatggtcgtattcacatactaatt
gctacggatgttgtagcacgtggtcttgatgttccacgtatcagtcatgttattaactac
gacttaccattcgacagcgaatcatatgttcaccgtattggtcgtactggtcgtgctggt
cgtgaaggtgaagcgattttatttgcatcacaccgtgaaatgcgtttattaaatcgttta
gaacgtgctactgaaggtcaaatcacaccatttgatatgcctgatgcaagccagttaagc
aaacaccgtattgaaaagacaaaagaaaagcttgtgagtgttgctgcaagtcctaatctt
gagaaatacgctgaagtattagcgaagtttactgaagaaactgaaatcactacggaacaa
cttgctgcagcaatgttataccaattgcaacaaaaactaccattattcccacaagctgat
ccggtagataagcgtggtgaacgccgtggtcgtgatggtatgcgtaatgaccgaggtgat
cgtcgtggtcgtgaaggcggacgcgagcgtcgtaattctggtgactttgctacttacaaa
tttgctgttggacgcgcacaaggtgtaaaaccaagtgatatcgtaggtgcaatcgccaat
gaagtgcgtattaattcgcgtgaaatcggtaacatcaaactattcgataatcactgtcat
gttgaattaccaaagtcacttccgggtcaaggctttgagaagttaaagaatgtgacaatt
cgtcgtcataaaattaaccctagcctcgttgagggtgcatcacacagttcaggttatgat
tctgaaaatcgtggtaaacgtccacctcgtaagcgtgagcgttttaatgatgatcgttca
atgaaaacgtttaaaaagaaatcgaataaaccaagaagagaagaacgctcagttcctaca
tttaactaa
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