Pseudomonas sessilinigenes: C4K39_0293
Help
Entry
C4K39_0293 CDS
T07575
Name
(GenBank) ATP-dependent DNA helicase RecS (RecQ family)
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K39_0293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psep03019
]
C4K39_0293
03400 DNA repair and recombination proteins [BR:
psep03400
]
C4K39_0293
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4K39_0293
Messenger RNA biogenesis [BR:
psep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K39_0293
DNA repair and recombination proteins [BR:
psep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4K39_0293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
MarR_2
TrmB
Cys_Met_Meta_PP
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AZC22000
LinkDB
All DBs
Position
328667..330601
Genome browser
AA seq
644 aa
AA seq
DB search
MHSTLEQVFGYPQFRPGQEATVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQGHGIAAASIDSAQGREEANEVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFKIPQALLLTATATPKVIADM
QARFAIAAGDVVTTGFYRPNLNLLVEPVRGADKRKRLVQWLGERAGQPSIVYVTLQKTAE
QIAEYLGQQGIAAQAYHAGLPHEERESIQRRFMAGNSQCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELSGIRYVLDDLQ
ACAPQGQWEFMLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKLLLEPSTL
LERFEGERRDFVDAIIQTSSRARTWATVNFDALYQQHQAPRQRVVKALDYLQEKGWVEVE
SKQMTEVYSLLQDNFDPAALGTELHAYFARHEGSEIARIHGMLELFASEQCLGYRLAQYF
GDQQAPQQCGHCSVCQGRVACLPTPPALPALVDKNFAELCGNFIHRHQQHTGEVPGAERL
ARFLCGLSVPLFTKLKARSISGFATLEDYPYSAVREWCVTQLPE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacagtacccttgaacaggtcttcggttatccacagtttcgcccgggccaggaggcc
acggtcagcgcggtcctggctgggcgctcggcggcggcgatcttccccaccggctccggc
aagtccctgtgctaccaactgcccgcactgctgttgccgcacctgaccctggtggtatcg
ccgctgttggcgctgatgcaggaccaactggcgtttcttcaggggcatggcatcgccgct
gcgagcatcgattcggcccaggggcgggaggaggccaacgaagtgatggcccgggcccgt
tccggggagctgaagatcctgatgatctcggtcgagcgcctgaagaacgaacgtttccgc
aactttttgcagcaggtgcccatctccctgctggtggtggacgaagcgcactgcatttcc
gaatggggccacaactttcggccggactacctgaaactgccggactaccagcgccagttc
aagattccccaggccctgctgttgacggccacggcgaccccgaaggtgatcgccgacatg
caggcgcgtttcgccatcgctgcgggcgatgtggtcactaccggtttctaccggcccaac
ctcaacctgctggtggagccggtacggggtgccgacaagcgcaagcgcctggtgcagtgg
ctgggtgaacgggccgggcaaccgagcatcgtctacgtgaccttgcagaagactgccgag
cagatcgccgagtacctgggccagcaggggattgccgcccaggcttaccacgccggtttg
ccacacgaggagcgcgagtcgatccagcggcgcttcatggcagggaacagccagtgcatc
gttgccaccattgccttcggcatgggtatcgacaagagcgatattcgcaatgtggtgcac
ttcgacctgcccaagtccatcgagaactacagccaggaaatcgggcgtgccgggcgcgat
ggccagccctccgactgcctggtgctggccaaccgcgacagcctcaacgtcttggagaac
ttcgtctacggggatactcccgagttgagcggaatccgctacgtgctggacgatttgcag
gcctgtgcaccgcaagggcagtgggagttcatgctgggaccactggccgaccagagcaat
atccgccaattgccgctcaagaccttgctggtgcaattggagctgcgtggcctgattgcc
ccgcgctatgcctatttcgccgagtaccgcttcaagctgttgcttgagccctcgaccttg
ctggagcgtttcgaaggggagaggcgtgatttcgtcgatgccatcatccagacctcgagc
cgtgcccggacctgggccaccgtgaatttcgatgcgctctaccagcagcaccaggcaccg
cgccaacgggtggtcaaggcgctggactatctccaggaaaaaggctgggtagaagtggaa
agcaagcagatgaccgaggtctacagcctgttgcaggacaatttcgatccggctgccctg
ggcactgagttgcatgcctatttcgcgcgccatgagggcagcgagattgcccggatccac
gggatgctcgagttgttcgccagtgagcagtgcctggggtatcgcctggcgcagtacttt
ggcgaccagcaggcgccgcaacaatgtgggcattgttcggtttgccagggacgagtcgcg
tgcttgccgacaccgccggccttgcccgcacttgtggataaaaattttgccgagctgtgc
ggcaattttatccacaggcaccagcagcacacgggcgaggtgcctggagcggaacggctg
gcacgttttctgtgcggcctgagcgtgccgttgttcaccaagctcaaggcacggagcatt
tccggcttcgcgaccttggaggattacccctacagcgcagtgcgagagtggtgcgtcact
cagctgcctgagtga
DBGET
integrated database retrieval system
