Pseudomonas sessilinigenes: C4K39_0730
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Entry
C4K39_0730 CDS
T07575
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C4K39_0730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psep03400
]
C4K39_0730
Enzymes [BR:
psep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C4K39_0730
DNA repair and recombination proteins [BR:
psep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K39_0730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AZC22428
UniProt:
A0ABX8MS89
LinkDB
All DBs
Position
800460..804149
Genome browser
AA seq
1229 aa
AA seq
DB search
MTGQRPLALAFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGEAEGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFLREEIPAPDSLIEQLREQYPPEQWAACANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVLRDYWRLFCYPLQGD
ALNWVRSHWVGPAELLPRVRAMFGNERRGPMEQTPAELIEASLQERREALVQIKAPWRQW
SAQLRDICLQGVASKSVDGRKMQARYFEPWFDKIDAWVDDESLEQLDIGTGFSRLTPEGM
SEAWKSDAPSHPGLEAMAGLKASLEALPSPDAAVLQHAAQWVGARFEEEKRRRAEMGFDD
MLLRLDGALQSDGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNDPTTGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHSLGTNFRSSQAMVSAVNHVFLHAEQRQQ
GRGAFLFRQPDGQNPVPFLAVAAQDRKERLLVDGQAVPALNFWLLPSEQPLSAAQYRQHQ
AASCASAIVGLLNGGQQGRSGFARGPQELEGLLPADIAILVRDGKEAQAIRAELAARGVR
SVYLSDKDSVFAAQEARDLLVWLKACAEPDVERPLRAALASLTLNLPLVELERLNQDELA
WEARVMQFRGYRAIWRSQGVLPMLRRLLHDFQLPQALMARSDGERVLTNLLHLSELLQQN
AAELDGEQALIRHLTEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSTKPVDGSRLPLHYHDAAGKPQVSLRPSAELIAQADDERLAEDLRLLYVALTRARHACW
LGVADLKRGNHSNSILNLSALGYLLGGGAQLNESTGLQRWLLDLQQGCDAIAVAELPPAD
DQRFYPPRNEARLLAALAPVRRAAENWWIASYSALRISDTLGVGSQAPDDPQAQKLFDDE
RLDPEAPREVVASSGDIHRFPRGPNPGTFLHGLLEWAGGEGFRASPEAITDAVARRCNRR
GWEGWIPTLSDWLQQVLQVPLPAGEGQPPVVLGQLVQYRVEMEFWFASHKVDVLKLDELV
RQQTHQGAPRVTAEPVLLNGMFKGFIDLTFEHHGRYYVADYKSNWLGVDDAAYTEQAMEQ
SILDNRYDLQYVLYLLALHRQLKARLADYDYDRHMGGALYLFLRGTQAASRGLYFTRPPR
QLIERLDLMFQGQAEPPRVEPAWEQGVLL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgactggacaacgccccctggccctggcttttccgctgcacggcagccagctgatcgag
gccagtgccggtacaggcaagaccttcaccatttccgcgctctacctgcgcctggtactg
ggccatggcggtgaagccgaaggttttggccgcgagctgctgccgccacagatcctggtg
gtgacgttcaccgacgccgcgaccaaggaactgcgcgagcgtatccgcacccgcctggca
gaggccgcacgcttcttgcgtgaagaaatcccggccccggacagcctgatagagcagttg
cgcgagcaatacccccccgagcaatgggccgcctgtgccaatcgcctggatatcgcagcc
cagtggatggacgaggcggcggtctccaccatccacagttggtgccagcgcatgctgcgc
gaacacgctttcgacagcggcagcctgttcacccagaccctggagaccgaccacagcgac
ttgctgggccaggtcctgcgcgattactggcgattgttctgctaccccctgcaaggcgac
gcactgaactgggtgcgtagccattgggtggggccggccgagttgctgccccgggtccgg
gcgatgttcggcaatgagcggcgcgggccgatggagcagacgccagccgagttgatcgag
gccagcctgcaagagcgccgcgaagccctggtgcagatcaaggcaccctggcgccaatgg
tctgcgcaattgcgggatatctgcctgcaaggggtggccagcaagagcgtcgatggacgc
aagatgcaggcgcgttatttcgagccctggttcgacaagatcgacgcgtgggtcgatgac
gagagccttgagcaactggatatcggcaccggtttcagtcgcctgaccccagaaggcatg
agtgaggcctggaagagcgacgccccaagccatcccgggcttgaggcgatggccggactc
aaggccagcctggaggccttgcccagcccggatgcggcggtgctgcaacatgctgcacaa
tgggtcggggcacgctttgaggaagagaagcgccgccgtgccgagatggggttcgacgac
atgctgctgcgcctcgatggcgccttgcagagcgatggcggcgagcgtttggcgagcctg
atccgcgagcagtttccggtggccttgatcgatgagttccaggataccgatccggtgcag
taccgcatcttcgagagcatctatcgcatcgaagacaacgacccgacgaccgggctgttc
ctgatcggcgaccccaagcaagcgatctacgcctttcgcggtgccgatatctatacctac
ctgcgggcgcgccaggccaccagtggccgcctgcatagcctgggcaccaacttccgctcc
agccaggccatggtcagtgcggtcaaccacgtgttcctgcatgccgagcagcgccagcaa
gggcgaggcgctttcctgtttcgccagcccgatggccagaacccggtgccgttcctggcc
gtggcggcccaggaccgcaaggagcgcctgctggtcgatggccaagccgtaccggcactg
aatttctggttgctgccttcggagcaaccgttgtccgcagcccagtatcgccagcaccag
gccgcgtcctgtgccagtgccattgtcggcctgctcaatggcggccagcagggccgcagt
ggttttgcccgcggcccgcaagagctcgaaggcctgctgccggcggacatcgccatcctg
gtacgcgacggcaaggaggcccaggccatccgtgccgaactggccgcccgcggggtgcgc
agcgtgtacctctcggacaaggactcggtgtttgccgcccaggaagcccgcgacctgctg
gtgtggctcaaggcttgtgccgagccggacgtggagcgtccgctgcgtgccgccctggcg
tccttgacactgaacctgcccctggtggaactggagcgcttgaaccaggacgaattggcc
tgggaagcgcgagtcatgcagttccgtggctatcgggcgatctggcggagccagggcgtg
ctgccgatgctgcgccgcctgctccacgacttccagttgccccaggccctgatggcccgc
agcgatggcgagcgggtactgaccaacctcctgcatctgtccgaattgctgcagcagaac
gccgccgagctcgatggcgagcaggcgctgatccgccacctcaccgaacacctggccttg
tccgggcaagcgggtgaggagcagatcctgcgcctggaaagcgatgagcaattggtaaag
gtggtcaccatccacaaatccaagggcctggagtaccccctggtgttcctgccgttcatt
tgctccaccaagccggtggacggcagccgcctgccgctgcattaccacgatgccgccggc
aagccccaagtcagcctgcgccctagcgcagagctgatcgcccaggctgacgacgagcgc
ctggccgaggacctgcggctgctctatgtcgccctgacccgggcccggcatgcctgctgg
ctgggagtcgccgacctcaagcgcggtaaccacagcaactcgatcctgaatctctcggcc
ctgggctacctgttgggcggcggcgcgcagttgaacgagtccactggcttgcagcgctgg
ttgctggatctgcagcaaggctgcgatgccatcgcggtggccgagttgccgcccgccgat
gaccagcgtttctatccgccgcgcaacgaagcccgcctgctggctgcgctggctcccgtg
cgccgggccgcggagaactggtggatcgcctcctatagcgccttgcggatcagtgacacc
ctgggtgtgggcagccaggccccggacgatccccaggcacaaaagttgttcgatgatgaa
cgcctggaccccgaggcgcctcgggaggtcgtcgccagcagtggcgatatccatcgtttt
ccccgcgggccgaaccccggcaccttccttcatggcctgttggaatgggcgggtggcgaa
ggctttcgtgcgtcccccgaagcgatcaccgatgcggtcgcccgccgttgcaatcgccgg
ggctgggaaggctggatcccgaccctcagcgattggttgcagcaggtgctgcaagtaccc
ttgccggcgggagaggggcagccgcccgtggtgctcgggcagttggtccagtatcgggtg
gagatggagttctggttcgccagccacaaggtcgatgtactcaagctcgacgaactggtg
cgccagcagacgcaccagggggcgccccgggtgactgccgagcccgtgctgctcaatggc
atgttcaagggctttatcgacctgaccttcgagcaccacggccgctactacgtggccgac
tacaagtccaactggctgggcgtcgatgacgccgcctacaccgagcaggccatggaacaa
tcgatcctcgacaatcgctatgacctgcagtacgtcctgtacctgctggccctgcaccga
cagttgaaggcccgcctggccgactacgactacgaccggcacatgggcggggctttgtac
ctgttcctgcggggcactcaggcggccagccggggcctgtacttcacccgcccgccgcgg
cagttgatcgagcgcctggacctgatgttccagggccaggccgagccgcccagggtcgaa
cctgcctgggaacagggagtgctgctatga
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