Pseudomonas sessilinigenes: C4K39_1622
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Entry
C4K39_1622 CDS
T07575
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psep
Pseudomonas sessilinigenes
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psep03009
]
C4K39_1622
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K39_1622
Ribosome biogenesis [BR:
psep03009
]
Prokaryotic type
rRNA helicases
C4K39_1622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AZC23313
LinkDB
All DBs
Position
1689898..1691241
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AA seq
447 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFMLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEAERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEHLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPSRQQTM
LFSATTGGSGLREMVAKVLDNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIIFTNTRVMADRIYGRLVAQDYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNEGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAAGTKKKKTDTKGDKKKALAKSPTKRKSANR
PKSESPALVSQDGLAPLKRRKPAPAAE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccgactccggtacaggccgcggctattccgctcgcgctgcaagggcgtgacctg
cgggtgacggcgcagaccggtagcggcaagaccgccgccttcatgctgccgatcctcaat
cgcctgatcggcccggcgaaaatccgcgtcagcatcaagaccctgatcctgctgccaacc
cgggagctggcccagcagaccctgaaggaagccgagcgtttctcccagttcaccttcatc
aagtccggcttgatcaccggcggtgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggatatcctcatcggtaccccgggtcgcctgctggagcatctcaatgccggcaac
ctggacctcaaggaagtggaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggctttgccgaagacgtgcaacgcttggtggatgagtgcccgagccgccagcagaccatg
ctgttctccgccaccaccggtggttccggcctgcgggaaatggtcgccaaggtcctcgac
aaccctgagcacctgcaactcaacagcgtcagccagctcaacgagaccacgcgccagcag
atcatcacggccgaccacaaccagcacaaagagcagatcgtcaactggctgctggccaac
gagacctaccagaaggccattatcttcaccaacacccgggtcatggccgaccgtatctac
ggccgcctggtggcccaggactacaaggcgttcgtcctccacggcgacaaggaccagaag
gaccgcaagctggccatcgatcgcctgaagcagggcggggtgaagatcctggtggccacc
gatgtcgccgcccgcggcctggacgtcgagggcctggacctggtgatcaacttcgacatg
cctcgcagtggcgacgagtacgtgcaccgtatcggccgcaccggtcgtgctggcaacgaa
ggcctggccatctcgctgatctgccatggcgactggaacctgatgtcgagtatcgagcgc
tacctcaaacagagcttcgagcgccgcaccatcaaggaagtcaagggcacttacggcggt
ccgaaaaaggtcaaggcctccggcaaggctgctgggaccaagaagaaaaagaccgatacc
aagggcgacaagaaaaaagccctggccaagtcgccaaccaagcgcaagagcgccaaccgg
ccaaagagtgagagcccggctctggtcagccaggatggcctggcgccgctcaagcgccgc
aagcccgcaccagccgctgagtaa
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