Pseudomonas sessilinigenes: C4K39_1863
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Entry
C4K39_1863 CDS
T07575
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K39_1863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psep03019
]
C4K39_1863
03009 Ribosome biogenesis [BR:
psep03009
]
C4K39_1863
Enzymes [BR:
psep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C4K39_1863
Messenger RNA biogenesis [BR:
psep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4K39_1863
Ribosome biogenesis [BR:
psep03009
]
Prokaryotic type
rRNA processing factors
C4K39_1863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AZC23548
LinkDB
All DBs
Position
complement(1925036..1928233)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDNPDANTNQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EAAAPVAAPAPVAEPSLFKGLVKSLVSLFATKEEPVAPAVVEKPVTERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERQPRELREAREEAPTTAREERQPRAPREER
QPRPPREERKPRGEREERVRELREPLDAAPAVAAATAAVVAEERPARQPREERQPRQPRE
ERQPRTEQAQAAAASEEEVLPNEEQLQEEGQDNADGERPRRRSRGQRRRSNRRERQRDAN
GNVIEGSEENTEEPSSDDLAAGLAVTAAVASTTISASAEAEAHQQAERATAAVEEKAPEA
PVVEATTPVEAPAAPAVEVAPVVEEQPKVEVVTEPAVVVQAQPVVAEQPVAEPIAQPVVE
EKAIEPAQEAPAPAPVAEPVVVEQPVVAQQPAQVEEPAPVAAPVAVEAPAPVVEATPASA
LTSNGRAPNDPREVRRRKREAERLQKEAELAAATASTEAEVTAEPAPVEAPAVIETAPQA
VEVVEATPVAEPAIEQPAPTDEEAPRAVEHVAHAEKEQHEPKPLA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagat
ggccagcgcctctacgacctggacatcgagtccggtgctcgcgagcagaaaaaagccaac
atctataaaggccgtatcactcgcatcgaacctagcctcgaggctgcctttgtcgacttc
ggctctgagcgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaatatcaaggacgtgctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgctgccctcaccaccttcatcagcctg
gccggtcgctacctggtcctgatgccgaacaacccacgggcaggtggcatctcccgccgc
atcgaaggtgaagagcgcaacgaactgcgcgaagcgctgaacggcctggtggctcctgcc
gacatgggcctgatcgtccgcaccgccggcctgggtcgcagcagcgaagaaatgcagtgg
gacctggactacctactgcaactctggaccgctatcaaggaagcgtcccaggaccgttcc
gcaccattcctgatctaccaggaaagcaacgtcatcatccgcgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcaatacgccagcaagatcaagctgtacgaagacagcgta
ccgctgttcaatcgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccatcgtcatcgacccgactgaagccctggtgtccatcgac
atcaactcggctcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcagcggaagaaatcgctcgccaactgcgcctgcgtgacatcggtggcctgatc
gtcatcgacttcatcgacatgaccccagccaagaaccagcgtgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgtgcccgcgtgcagatcggccgcatttcgcgcttcggc
ctgctggagatgtcccgccaacgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccacgctgcagcggcaccggcatcatccgtgacgtcgagtccctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtccgcgctcaagtg
ccaattccggttgccgccttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaa
ctgcgtacccgggcccgtatcgtcatcctgccgaacgaccatctcgagacgccgcacttc
gaagttcagcgcctgcgcgatgacaacccggatgccaacaccaaccagtccagctacgag
atcgccgctgccgctgccgaggccgaggaggttcaaccagccgccgcgacccgcaccctg
gtccgccaggaagccgcagtgaagacggctccggcccgcgccaacgccccggttccaacc
gaagccgcggccccggtcgccgctccagccccagtcgccgagccaagcctgttcaaaggc
ctggtcaagtccctggtcagcctgttcgcgaccaaggaagagccagtagctccagctgta
gtcgagaagccggtaaccgagcgacctgcccgcaacgaagagcgtcgcaacggtcgccag
cagagccgcaatcgcaacggtcgtcgcgatgaagagcgcaagcctcgcgaagagcgtgct
ccacgtgaagaacgcgccccacgcgaagaacgccagccacgtgaactgcgcgaagcccgc
gaggaagcgccaaccaccgctcgtgaagagcgccagccacgtgctccgcgtgaagaacgc
cagccgcgccccccacgtgaagaacgcaagccacgcggcgagcgtgaagagcgtgtgcgc
gaactgcgcgagccactggacgctgctccagcggtagctgccgcaaccgccgccgtggtt
gccgaagaacgtccggcccgccagcctcgtgaagagcgccagccacgccagccacgcgaa
gaacgccagccacgcactgagcaggctcaagccgcggctgccagcgaagaagaagtgctg
ccgaacgaagagcaactgcaggaagaaggccaggacaacgccgatggcgagcgtccacgc
cgtcgttcccgcggccagcgccgtcgcagcaatcgtcgcgagcgccagcgtgatgccaac
ggcaacgtgatcgaaggctcggaagaaaataccgaagagccaagcagcgacgacctggct
gccggtcttgcggtcaccgccgccgttgccagcaccaccatcagtgccagcgccgaagcc
gaggctcaccagcaagccgagcgtgcgactgctgccgtggaagaaaaagcccctgaagca
ccagtagttgaagccaccaccccggtagaagctccagcagccccagcggtcgaagtggct
ccagtagtcgaagagcagccaaaggttgaagtggtcaccgagcctgccgtggtagtccaa
gcccagccagtggtcgccgaacagccggtagccgaaccgatcgcccagccagtggttgaa
gaaaaggccatcgagcctgcccaggaagccccggcaccagctccggtggccgaaccggta
gtcgtcgaacagcccgtggttgcccagcagccagctcaagtcgaggagccagctccggtt
gcagcccccgtagctgtcgaagcaccagctccagtggttgaggctaccccagccagcgcc
ctgaccagcaacggccgcgccccgaacgacccacgtgaagtgcgtcgccgcaagcgtgaa
gccgagcgcctgcagaaggaagccgaactggccgccgctaccgcttcgactgaagccgaa
gtgactgccgagcctgctccggtagaagcgccagccgtgatcgagacggcaccacaagct
gtcgaggtcgttgaggcgactccggtagccgagcctgcgatcgagcagcctgccccaaca
gacgaggaagcacctcgcgctgtcgagcacgttgcacatgccgagaaagagcagcacgag
cctaaacccctcgcctga
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