Pseudomonas sessilinigenes: C4K39_3686
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Entry
C4K39_3686 CDS
T07575
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K39_3686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psep03021
]
C4K39_3686
03019 Messenger RNA biogenesis [BR:
psep03019
]
C4K39_3686
Transcription machinery [BR:
psep03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C4K39_3686
Messenger RNA biogenesis [BR:
psep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4K39_3686
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AZC25354
UniProt:
A0ABX8MR14
LinkDB
All DBs
Position
3938731..3939990
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSSDASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPNDRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggtgaggaaatctccggtgatggcgtgctggagatcctccaggac
ggcttcggcttccttcgctcctccgacgcctcctacctggccggcccggacgatatctac
gtgtcgccaagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgataccatcaac
tacgaccgtcccgagaacgccaagaacaagatcctgttcgagaacttgaccccgctgttc
cccaacgatcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggtcgc
gtcatcgatctgtgtgccccgatcggcaagggccagcgtggcctgatcgtcgctccgccg
aaagcgggtaaaacgatcatgctgcagaacatcgcggccaacatcacccgcaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgtggcgaagtggtcgcttccaccttcgacgagccgccaacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgta
gtgatcctgctggactccatcacccgtctggctcgcgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgatgcccacgccctggagaagccgaagcgcttc
ttcggtgccgcgcggaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaagagttcaaggggaccggcaac
atggagctgcccctggaccgtcgtatcgccgagaagcgcgtattcccggccatcaacatc
aacaagtccggtacccgccgcgaagagctgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcatccgatggatgaagtcgccgctatcgagttcctggtc
gacaagctgaagcagaccaagaccaacgatgaattcttcctgtcgatgaagcgcaagtaa
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