Pseudomonas sessilinigenes: C4K39_3865
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Entry
C4K39_3865 CDS
T07575
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K39_3865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psep03019
]
C4K39_3865
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K39_3865
Messenger RNA biogenesis [BR:
psep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K39_3865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZC25533
LinkDB
All DBs
Position
complement(4119690..4121558)
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AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSIDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLASKLLHDPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAMAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDTRNSRSARAPRGDNPNGGGGGRK
DKGKDKGGKDKPARGERQPREQKPRENAASREQRQPTPRPDRAPDEFLDDDVDNFGNRAD
YVSPYQNKGNQQGRGRRPGAPSQGQGAGGNAPRGGGQGRSGNPRNGGGGGSASNSNGGTP
AKRNGPRSGASRDGQGRRDESRNRRGRDDQGRQEPAVQNPRSVQPKIMHKESKVDRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgctatcgaagcagccggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggttgcggcacagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggctgtttcccaacggtcatccggacaaatcccagcgccatggcccacgccaaccc
cgcgtcctggtcctgaccccgacccgcgaactggccgcgcaggtgcatgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagtgcctgcatctttggtggtgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtcgacgtgctggtggcgtgccccggccgcctg
ctggacctggcaggccagggcagcatcgacctgtcccacgtggaaatcctggtcctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaggtccttgcccgc
ctcccggccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccagcaagctgctgcatgacccggagcggatcgaagtcacgccgccgaacaccacg
gtagagcggatcgagcagcgggtcttccgcttgccggccagccacaagcgggcactgctg
gcacacctgatcaccgctggtgcctgggaacaggtcctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcatggcctgagcgccatggcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggctggcgaagtg
cggatcctggtggccaccgatatcgccgcccgcggcctggatatcgaccaactgccccac
gtggtcaacttcgaactgcccaacgtcgatgaagactacgtccaccgtatcggccgtact
ggccgggccggtcgttcgggcgaagccatctcgctggtggccccggacgaagagaagctg
ctcaagagcatcgagcgcatgaccaagcagaagatcgccgacggcgacctgatgggcttc
gatgccagcgcggtggaagccgagaagccggaagtgcgcgagcgtccggacacccgtaat
tcgcgcagcgcccgcgcccctcgtggcgataacccgaacggtggcggcggtggccgcaag
gacaagggcaaggacaagggcggtaaagacaaaccagcccgcggcgaacgccagccccgc
gagcagaagcctcgcgagaatgccgcttcgcgcgagcagcgccagccgactcctcgccct
gaccgggcaccggacgaattcctcgacgacgacgtggacaacttcggcaaccgcgccgac
tacgtcagcccctaccagaacaagggcaaccagcaaggccgcggccgtcgtcccggtgcc
ccgagccagggccagggcgccggaggcaatgccccccgtggtggtggccagggtcgcagt
ggcaacccgcgcaatggtggtggcggtggtagtgccagcaacagcaacggcggcacgccg
gccaaacgcaacggcccgcgcagtggcgcttcccgtgatggccaaggccgtcgcgacgaa
tcgcgtaaccgtcgtggccgtgacgaccagggccgccaggagccagcggtgcagaaccct
cggagcgtccagccgaagatcatgcacaaggagtccaaggtcgatcgcttcccgacgcct
gaacagctcgaccagctgccaagccgcccacggggcgaaaaaccagcgctgctgacgcgt
aaccgctaa
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