Pseudomonas sessilinigenes: C4K39_3893
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Entry
C4K39_3893 CDS
T07575
Name
(GenBank) ATP-dependent 23S rRNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
psep
Pseudomonas sessilinigenes
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psep03009
]
C4K39_3893
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C4K39_3893
Ribosome biogenesis [BR:
psep03009
]
Prokaryotic type
rRNA helicases
C4K39_3893
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
TraP
Motif
Other DBs
NCBI-ProteinID:
AZC25561
LinkDB
All DBs
Position
complement(4151080..4152465)
Genome browser
AA seq
461 aa
AA seq
DB search
MTTIATAFNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGLDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVMCPTRELADQVAKELRRLARAEDNIKVLTLCGGVPFGPQIA
SLEHGAHIIVGTPGRISQHLDKGTLKLDGLNTLVLDEADRMLDMGFYDAIEAIIGQTPAR
RQTLLFSATYPAGIKQLASKFMRDPQQVKVETLHSDSQIEQHFYEISPEDRMDAVVKVLN
HFRPQSCVAFCFTKQQVQETVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVSPSEAHRAQAIE
QLQKAPLNWEQIDGLKSQGGGPLLPAMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQV
GKIAIFDFQAYVAVERGIAKQALQRLNSGKIKGRSLRVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccatcgccaccgctttcaacaccctgcccttgtccgccgccatgctggccaac
ctcgactccctcgggtatgcccagatgacgccgatccaggcgcaaagcttgccggtgatc
ctcaagggcctggacctgatcgcccaggccaagaccggcagcggcaagaccgccgccttc
ggcatcggcctgttgaacccgatcaacccgcgctacttcggctgccaggccctggtgatg
tgcccgacccgcgaactggccgaccaggtcgccaaggagctgcgtcgcctggctcgcgcc
gaggacaacatcaaggtcctgaccctgtgcggcggcgtgcccttcggcccgcagatcgct
tccctggagcacggtgcccatatcatcgtcggcaccccgggccgcatctcccagcacctg
gacaagggcacgctgaaactcgacggcctcaacaccctggtgctcgacgaagccgaccgc
atgctcgacatgggcttctacgatgccatcgaggccatcatcggccagaccccggcacgc
cggcagaccctgctgttctccgccacctacccggcgggcatcaagcagttggcgtcgaag
ttcatgcgcgatccgcagcaggtaaaagtcgagacgctgcacagcgacagccagatcgag
cagcacttctacgaaatctctccggaagatcgcatggatgcggtggtcaaggtgctcaac
cacttccgcccgcagtcttgcgtggccttctgcttcaccaagcagcaggtgcaggaaacc
gtcgaccacctgaccgccaagggcatgtccgcagtgggcctgcacggtgacctggaacag
cgcgaccgcgaccaggtgctggcgatgttcgccaaccgcagtacgtctgtgctggtagcc
accgatgtcgccgcccggggcctggatatcgacgccctggacatggtgatcaacgtcgag
ctggcgcgagattcggaaatccacatccaccgggtcggccgtaccggtcgcgccggcgag
aaaggcatcgccatcagcctggtgtcgccgtccgaggcccaccgtgcccaggccatcgag
cagttgcagaaagctccgctgaactgggagcagatcgacggcctgaagagccagggcggc
ggcccgctgctgccagccatgagcaccctgtgcatcgccgccgggcgcaaggacaaggtg
cggccgggcgatattctcggcgcgctgaccggcgaggccggcatccccggcgcccaggtc
ggcaagatcgcgatcttcgacttccaggcctacgtggccgtggagcgcggcatcgccaaa
caggccctgcaacgcctcaacagcggcaagatcaagggccgttcgctgcgcgtacgtatc
ctgtaa
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