Pseudomonas sessilinigenes: C4K39_5312
Help
Entry
C4K39_5312 CDS
T07575
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
psep
Pseudomonas sessilinigenes
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psep03400
]
C4K39_5312
DNA repair and recombination proteins [BR:
psep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K39_5312
Archaeal homologous recombinant proteins
C4K39_5312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
ABC_tran
AAA_15
cobW
RsgA_GTPase
AAA_22
nSTAND3
MMR_HSR1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AZC26956
LinkDB
All DBs
Position
5740940..5744584
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNIGRETKVPEVDSEILTSDPRTLLRRGTGSGFAEVDFVGIDGRRYRARWETNRARDKA
NGKLQGSRQSLTDLDDTQLLSNQSKAEYKQLIEARLGLNFEQFTRAVMLAQSEFSAFLKA
DDKERSELLEKLTNTAIYSQLGKRAFSKAKEADEAHKALTTQASGVAPLPDEERAELDQQ
LGAARDQLKGRQLQLKQLEAQHGWLKELRQWQEARHSAAEQLQEAEAEAKVLAPKRLRLE
RLEQLAPQRHQFLRQVELSATLEPLRQQIEQQQARHTQLQQQQATHQQQVQDSTASLAKA
QEQSNDKAPLLREAFAEQGSLQRLEQELAQATQAQERAEQANTQGQQDIQHLQEQQRLVA
ERLERIAGQLQHSAALAPLSEAWDAHRGRLQQLVQIGNRLNQGQAELPGLEQRADTAARQ
LSEQRSQLELLYREAGAEPQAVAEQIQLLGTLLQDNRKQQRSFEDLARLWAQQQELEQRT
QALQDKQQTAAIERDALTKAGIQAKADLAVAEQTLSVTQALLERQRLARSASVEELRAQL
QDDQPCPVCGSVEHPYHQPEALLQSLGRHDENEEAAARKVVDGLKEQLAELRAQVQGLIA
QQKDLLQQQEQLATQQEALAPSLQAHPLGAQLLDQDPPQRDAWLQRQLEQLQQSITQDEQ
RQDALLTLQKDAARLQGQLQAAVDASQQAAQQLEKQREQLDADRQRLDEELGGFSQWLPS
EQLDGLRRDPAASFMQLDQQVLQRIEQLREQQDETQEQQQRQLALDKEQDRQQTRQQQLH
DARQQAEALHQQQQARQQRLAELLGAHDSAEHWQQQLEQSVEQARSAQATAQQQAQELQQ
QLIQLAAELKAGQERCQALEAEQQQLAASIEQWRAQHPQLDDAGLQALLELDDSQVRQLR
ERLQANDKAIEQARVLLEERQQRLEQHQAQHNGNLEAEELAQALETTQQQALADEQQVAE
LRARQSEDQRRQEANQALAQGIAQAYEQWQRWARLSALIGSAEGDKFRKIAQAYNLDLLV
HHANAQLRQLVRRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLAS
MASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQ
VSRQGNGLSHLEVK
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctggccatccgcctgaagaacctggcctccctggccggcccgttcgagatc
gacttcaccgccgaacccctggccagcgccggcctgttcgccatcaccggccccaccggt
gccggcaagagcaccctgctcgatgccctgtgcctggcgttgttcggcgccgtgccacgg
ctgaacaatatcggccgggaaaccaaggtcccggaagtcgacagcgaaattctcaccagc
gatccccgcaccttgttgcgccggggcaccggcagcggttttgccgaggtggacttcgtc
ggcatcgacggccgccgctaccgcgcccgctgggaaaccaaccgcgcccgggacaaggcc
aacggcaagctgcagggcagccgccagagcctcaccgacctggacgatacgcaactgctg
agcaaccagagcaaggccgaatacaagcagttgatcgaagcacgcctggggctcaacttc
gaacagttcacccgcgcggtgatgctggcccagagcgagttcagcgccttcctcaaggcc
gacgacaaagagcgcagcgagctgttggaaaagctcaccaatacggcgatctacagccag
ttgggcaagcgcgccttcagcaaggccaaggaagccgacgaagcgcacaaggccctcacc
acccaggccagcggcgttgccccgctgccagacgaagaacgtgccgaactggaccagcag
ttgggcgccgcccgtgaccagctcaagggccggcaactgcaactcaagcagctggaggcc
cagcacggctggctcaaggaattgcgccagtggcaggaggctcggcacagcgccgccgaa
cagttgcaggaagccgaggcagaggcaaaggtcctggcccccaagcgcctgcgcctggag
cgcctggaacaactggcgccccaacgccatcagttcctgcgccaggtcgaactgagcgca
accctcgagcccctgcggcaacagatcgagcaacagcaggcacgacacacgcagttgcaa
cagcagcaggcaacgcaccagcaacaggtccaggacagtaccgccagcctggccaaggcc
caggaacagtccaacgacaaggccccattgctgcgcgaagcctttgccgaacaaggcagc
ctgcaacgcctggagcaagagctggcccaggccacccaggcccaggagcgcgccgagcag
gccaacacccagggccagcaggacatccagcacttgcaggagcagcaacgcctggtggcc
gagcgcctggagcggatcgccgggcaactgcagcacagcgccgcccttgcccctctgagc
gaggcctgggatgcccatcgcgggcgcctgcagcaactggtgcagatcggcaatcgcctg
aaccagggccaggcggaactgccgggccttgagcagcgtgccgacaccgccgctcgccag
ttgagcgagcaacgctcacagctggagttgctgtaccgcgaggccggcgccgagccccag
gccgtggcggagcagatccaattgctgggcaccctgctccaagacaaccgcaagcagcaa
cgttcgttcgaggacctggcccggctctgggcccagcagcaagagctggagcagcgcacc
caggccctgcaggacaagcaacaaacggcggccatcgagcgcgatgcgttgaccaaggcc
ggtatccaggccaaggccgacctggcggtagccgagcagaccctgagcgtgacccaggcc
ctgctggagcgccagcgcctggcccgcagcgccagcgtggaagagttgcgcgcgcaattg
caggacgatcagccgtgcccggtgtgcggcagcgtcgagcatccgtatcaccaacccgag
gccctgttgcaaagccttgggcgccatgacgaaaacgaagaagccgctgcccggaaagtc
gtggatgggctcaaggagcaactggccgaactgcgcgcccaggtccagggcctgatcgcc
cagcagaaagacttgctacagcaacaggaacaactggccacccaacaagaggccctggct
ccgagcctgcaagcccaccccctgggcgcccagttgctggaccaggacccgccccagcgc
gatgcctggttgcaacggcagttggagcagttgcaacagagcatcacccaggacgagcag
cgccaggacgccctgctgaccctgcaaaaggatgccgcgcgcctgcaaggccagttgcag
gccgccgtcgatgccagccagcaggccgcccagcaactggagaagcagcgcgagcagctg
gacgccgatcgccagcgcctggacgaagagcttggcggcttcagccaatggctgcccagc
gagcagctcgacggcctgcgccgcgacccggcggcgagcttcatgcaactggaccagcaa
gtgctgcaacgcatcgagcaactgcgcgaacagcaggatgaaacccaagaacagcagcag
cgccagctggccctggacaaggagcaggaccgccagcagacccgccagcagcaactgcac
gacgcccggcagcaggccgaggccctgcaccagcagcaacaggcgcgccagcagcggttg
gccgaattgctgggagcccacgacagtgccgagcactggcaacaacaactggaacagagt
gtcgagcaggcccgctcggcccaggccacggcccagcagcaggcgcaggaactgcagcag
caactgatccagctggccgccgagctcaaggccggccaggagcgctgccaggccctggaa
gccgagcaacagcaactggccgccagcatcgagcagtggcgcgcccagcacccgcaactc
gacgatgccggtttgcaagcgctgctggaactggacgacagccaggtccgacaactgcgc
gagcgcctgcaggctaacgacaaggccatcgaacaggcccgggtactgctcgaggaacgc
cagcagcgcctggagcagcaccaggcccagcacaacggcaacctggaagccgaggaactg
gcccaggccctggaaaccacccagcaacaggcattggccgacgaacagcaagtggccgaa
ctgcgtgcccggcagagcgaagaccaacgtcgccaggaggccaaccaggccctggcccag
ggcatcgcccaggcatacgagcaatggcaacgctgggcccggctcagcgccctgatcggc
tcggccgaaggcgacaagttccgcaagatcgcccaggcctacaacctcgacctgctggtg
caccacgccaacgcgcaactgcgccagttggtgcggcgttatcgcctcaagcgcggcggc
agcatgctcggcctgctggtgctggacaccgagatgggcgacgaactgcgttcggtgcat
tcgctgtccggtggcgagaccttcctggtgtccctggcgctggccctggggttggcgtcc
atggcctcgagcaccttgaagatcgagtcgctgttcatcgacgaaggcttcggcagcctc
gaccccgagtcgctgcagctggccatggacgccctcgacggcctccaggcccagggccgc
aaggtggcggtgatttcccatgtgcaggaaatgcacgagcggatcccggtacagatccag
gtcagccgccagggcaacggcctgagccacctggaggtgaaatga
DBGET
integrated database retrieval system
