Pseudomonas sessilinigenes: C4K39_5642
Help
Entry
C4K39_5642 CDS
T07575
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4K39_5642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psep03021
]
C4K39_5642
Transcription machinery [BR:
psep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4K39_5642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
PhyR_sigma-like
DUF4274
HTH_28
Motif
Other DBs
NCBI-ProteinID:
AZC27283
UniProt:
A0ABX8MHP4
LinkDB
All DBs
Position
complement(6110863..6111375)
Genome browser
AA seq
170 aa
AA seq
DB search
MGANPNPHYPLVGQMFKRDYQWLCACVARALGCHHSAQDIASETFVRILALPDPTVIREP
RALLTTIARRLVYEGWRRQDLERAYLESLALAPAPVHPSPEERALLIEALLAVDQLLNGL
SAKAKAAFLYHQLDGLTYVEIGALLGVSTSRVQQYMAEAFKRCYLALVEA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgaatccgaacccgcactacccgctggtcgggcagatgttcaaaagggactat
caatggctttgcgcttgcgtcgccagggccctgggatgtcatcacagcgcccaggacatc
gcctcggagaccttcgtgcgcatcctggcgctgcccgaccctacggtcatccgtgagcca
cgggcgctgctgaccaccatcgcccggcgcctggtctatgagggctggcgccgccaggac
ctggagcgggcctatctggagagcctggcgctggcgcctgctcccgtgcacccgtcgccc
gaagaacgggcgttgctgatcgaggcgctgttggccgtggaccagttgctcaacggtttg
tcggccaaggccaaggcggcgtttctctatcaccagctggacggcctgacctatgtcgag
atcggcgcgctgctgggggtgtccaccagccgggtgcagcagtacatggccgaggcgttc
aagcgctgctacctggcattggtggaggcatga
DBGET
integrated database retrieval system
