Pseudomonas sessilinigenes: C4K39_6171
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Entry
C4K39_6171 CDS
T07575
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K39_6171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psep03019
]
C4K39_6171
03009 Ribosome biogenesis [BR:
psep03009
]
C4K39_6171
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K39_6171
Messenger RNA biogenesis [BR:
psep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K39_6171
Ribosome biogenesis [BR:
psep03009
]
Prokaryotic type
rRNA helicases
C4K39_6171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZC27803
LinkDB
All DBs
Position
complement(6700677..6702350)
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTGAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGERSERYGDRPERGERERRAPMPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLDRLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgattccgatcatc
cttgccggtcacgatatgattggccaggcgcaaaccggtaccggtaagaccgctgccttt
gccctgcctatcctgaaccgcatcgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagtagcaactgctttcgaaacctacgccaagcaa
atgcctggcgtgaccgttgtggccgtctatggcggtgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcgcaaatcgttgtcgccacccctggccgtctgtgcgaccacctg
cgtcgtgacgagaaggtcctggctaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggagtcc
cgccagaccgtactgttctcggccactctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgaaggatccgaaacacgtcaagatccagagcaagacccagaccgttaccgcgatc
gagcaggcccacctgctggttcacgctgaccagaagactggtgcggtcctgagcctgctg
gaagtcgaagatttcgacgccctgatcatgttcgtgcgtaccaagcaagccaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggcgacatcgcc
cagaaccagcgcgagcgcgtgatcgattccctcaaggatggccgcctggacatcgttgtg
gctaccgacgttgccgcccgtggcctggacgtaccgcgcatcacccacgtattcaacgtg
gacatgccctacgatccggaatcctacgtgcaccgcatcggccgtaccggtcgtgccggt
cgtgaaggccgtgccctgttgctggtgaccccgcgtgagcgtcgcatgctgcaagtgatc
gagcgcgtgactggccagaaggttgccgaagttcgactgcccgatgcccaagccgttctc
gatgcgcgcatcaagaagctgaccaacagcctgtcgccgctggttgccgatgctgaagcg
acccatggcgacctgctggaccgcctgactgccgatatcggttgcagcccgcgtgccctg
gctgcggctctgctgcgcaaggctaccaatggtcaggcgctgaacctggcagcgatcgag
aaagagcgtccgctggtgccgaacagcgctccgcgtggcgagcgttccgagcgctatggt
gatcgtcctgagcgtggcgagcgtgagcgtcgcgcaccgatgccgctggctgagggccgt
gcccgttgccgtactgcgctgggtgcgcgcgatggtattgccgccaagaacctgctgggg
gcgatcctcaatgagggtggcctggctcgtgaagccatcggccggatccaggtgcgtgac
agcttcagcctggtagaactgccggaagaaggcctggatcgtttgctgaccaagctcaag
gacacccgcgtagctggcaagcagctcaagctgcgtcgctaccgcgaagattga
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