Pseudonocardia sp. EC080610-09: AD006_02990
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Entry
AD006_02990 CDS
T04146
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseq03019
]
AD006_02990
Enzymes [BR:
pseq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AD006_02990
Messenger RNA biogenesis [BR:
pseq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AD006_02990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
NACHT
T2SSE
AAA_30
PhoH
NuDC
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALL78308
LinkDB
All DBs
Position
611286..615221
Genome browser
AA seq
1311 aa
AA seq
DB search
MELAALRERITELGPAEAERLGSRLDRARDGRAQQRVADAVQKAGNRVARRRAALPRVSY
PATLPVSARREEIADAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVHGMIGHTQPRRL
AARTVAARIAEELGVELGGAVGWKVRFTDQVGDSTLVKLMTDGILLAELAGDKDLHQYDT
LIIDEAHERSLNIDFILGYLTRLLPRRPDLKVIITSATIDPERFARHFGEDDDPAPIVEV
SGRTFPVEVRYRPVVDPDDPDADPDRELDDAIGDAVVELQREGPGDVLVFLPGEREIREA
ADALERRNLRNTEILPLYARLSTAEQQRVWQSHTGNRVVLATNVAETSLTVPGVRYVVDT
GTARISRYSRRLKVQRLPIEKISQASANQRSGRCGRTSDGIAIRLYAEDDFDARPEFTDP
EILRTNLASVVLQMIALDLGEISEFPFVEPPDRRAVADGLDLLHELGALRPDRRSLTAVG
QSLSRLPVDPRLGRMLVEAHRNGCLREVLVIAAALSVQDPRERPTEQRQAADEKHRRFGV
DGSDFLAFLRLWDHLDERRDALSGNRFRRELREDFLHYLRVREWWDLHGQLRQAARSAGM
DLNERDPEWAAHADRIHRSVLAGLLSQVGMQDPLAEKKGKGDPKKERKGPKDYLGARGAK
FAIWPGSGLAKKPPRWVMAAELVETTRLWARTVAPVQPDWIEPLAEHLVKRTYSEPRWSR
NRGSAVVTERVTLHGLPLVADRTVAYGRIDPEVSRDLFLRHALVEGDWETRHPFFHANRE
LLDDAEELEHRARRRDLVVDEDTLFAFYDARVPADVVSGKHFDRWWKAASRESPGLLDYT
EELLATEAASQVDRGHYPDHLDAGGLTLPLSYAFEPGHHTDGVTVDVPVAALHQVDPTPF
TWQVPGLREELVTALIRTLPRNLRRNFSPAPDHARAALRRLAGETDRPLLDGLERELGRM
RNVEIRREDWELERLPEHLTVTFRVLDEAGAEIARDTDLERLRRDLAPKVREELAAAGSG
IEETGLTSWTIGELPRELPIRRGAHVVTGYPGLRDRGRSADVHVFATAPERDPAHHRGAR
RLLLLGTPNPGKQVQRGLDNRARLALSRNPHGSLDALLDDCTTAAADHLVGRGGGDPFDE
AQFARLAELLRMRLPATTLQVLDAARGVLEAWHATGAKLADLRGPATRDGAADVRAITDR
LVAPGFVTAAGATRLGDVKRYLQACEVRLDKLHADPGRDARWTAEMAPVEAEYRGLLAGL
PEHTEPSPALREIGWMIEELRVSLYAHPMRTRHPVSVQRVERAIDELPPPS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atcgaactcgcggcgctgcgcgagcgcatcaccgagctgggtccggccgaggccgagcgc
ctcgggagccgtctggaccgcgcgcgcgacggccgtgcccagcagcgcgtcgcagacgcc
gtgcagaaggccggcaaccgggtcgcccgccgccgggcggcgctgccgcgcgtctcctac
cccgcgacgctgccggtctccgcgcgccgcgaggagattgccgacgcgatccgggacaac
caggtcgtcatcgtcgccggggagaccggctccgggaagaccacccagctgccgaagatc
tgcctggagctcggccgcggtgtgcacgggatgatcggccacacccagccgcgacggctc
gcggcgcgcacggtcgcggcgcggatcgccgaggagctgggcgtcgagctcggcggggcg
gtcggctggaaggtccgcttcaccgaccaggtcggcgactcgaccctggtgaagctgatg
accgacgggatcctgctggccgagctggccggcgacaaggacctccaccagtacgacacg
ctgatcatcgacgaggcccacgaacgcagcctcaacatcgacttcatcctcgggtacctg
acccgcctgctcccccgccgtcccgacctcaaggtgatcatcacctcggcgacgatcgac
ccggagcggttcgcccggcacttcggcgaggacgacgatccggcgccgatcgtcgaggtc
tcggggcgcacgttcccggtcgaggtgcggtaccggccggtcgtcgatcccgacgacccg
gacgccgacccggatcgtgagctggacgacgctatcggcgacgccgtcgtcgagctgcag
cgcgagggccccggcgacgtgctggtcttcctgcccggcgagcgggagatccgcgaggcg
gccgacgccctggaacgccggaacctgcggaacacggagatcctgcccctctacgcccgg
ctctcgacggccgagcagcagcgggtctggcagagccacaccggcaaccgggtggtgctg
gcgaccaacgtggcggagacgtcgctgacggtgccgggtgtccggtacgtcgtcgacacc
ggcaccgcacgcatctcgcgctactcgcgccggctgaaggtgcagcgcctgccgatcgag
aagatctcccaggcgtcggcgaaccagcggtccggccgctgcggccggaccagtgacggc
atcgcgatccggctctacgccgaggacgacttcgacgcccgccccgagttcaccgacccg
gagatcctgcggaccaacctggcgtcggtcgtgctgcagatgatcgcgctggacctgggc
gagatctcggagttcccgttcgtcgagccgccggaccggcgcgccgtcgccgacgggctc
gacctgctccacgagctcggcgcgctccgcccggaccgccgctcgctgacggccgtcggg
cagtccctgtcccggctccccgtggacccgcggctgggccggatgctcgtcgaggcgcac
cgcaacggctgcctgcgcgaggtgctggtgatcgccgcggcgctgtcggtgcaggatccc
cgggagcgccccaccgagcagcgccaggcggcggacgagaagcaccggcgcttcggcgtc
gacggctcggacttcctcgccttcctgcggctctgggaccacctcgacgagcgccgcgac
gccctgtccgggaaccggttccgccgtgagctgcgcgaggacttcctgcactacctgcgg
gtccgtgagtggtgggacctgcacggccagctgcggcaggccgcacggtccgccgggatg
gacctgaacgagcgggaccccgagtgggcggcgcacgccgaccgcatccaccggtccgtc
ctcgcggggctgctgtcccaggtcggcatgcaggacccgctcgcggagaagaagggcaag
ggcgacccgaagaaggagcggaagggcccgaaggactacctcggcgcccgcggcgcgaag
ttcgcgatctggcccgggtcggggttggcgaagaagccgccgcgctgggtgatggccgcc
gaactcgtcgagacgacgagactgtgggcgcgcacggtcgcccccgtccagccggactgg
atcgagccgctcgccgaacatctcgtcaaacggacgtattctgaaccccgctggtcacgg
aaccgcggatcggccgtcgtgaccgagcgggtgaccctgcacgggttgccgctggtcgcc
gaccggaccgtcgcctacggccggatcgaccccgaggtgagccgcgacctgttcctgcgg
cacgcgctcgtcgagggcgactgggagacccggcacccgttcttccacgcgaaccgcgag
ctgctcgacgacgccgaggagctcgagcaccgtgcccgccgccgcgacctcgtcgtcgac
gaggacaccctgttcgcgttctacgacgcgcgggtcccggccgacgtcgtctccggcaag
cacttcgaccgatggtggaaggcggcgtcacgggagtcccccggtctgctcgactacacc
gaggaactgctggccaccgaggccgcgagccaggtggaccgcggccactaccccgaccac
ctcgacgccggcgggctcacgctcccgctgtcgtacgcgttcgaacccggccaccacacc
gacggcgtcaccgtcgacgtcccggtcgcggcgctgcaccaggtggacccgacgcccttc
acctggcaggtccccggtctccgcgaggagctggtgacggcgctgatcaggacgctgccg
cggaacctgcgccgcaacttctcccccgcacccgaccacgcgcgggcggcgctgcgacgc
ctggcgggcgagaccgaccgcccgctgctcgacgggctggagcgcgagctcggccggatg
cgcaacgtcgagatccggcgcgaggactgggagctggagcggctgcccgagcacctgacg
gtcaccttccgggtgctcgacgaggccggtgccgagatcgcccgcgacaccgacctcgaa
cgcctgcgccgcgatctagcgccgaaggtgcgcgaggagctggccgccgcgggcagtggc
atcgaggagaccgggctgacgtcgtggacgatcggcgagctcccccgtgagctgccgatc
cggcgcggggcccacgtcgtgaccgggtaccccggactgcgcgaccgcgggcggtcggcc
gacgtgcacgtcttcgccacggcccccgagcgcgaccccgcccaccaccgcggggcacga
cggctgctcctgctcggcacgccgaacccgggcaagcaggtccagcgcgggctcgacaac
cgggcccggctggcgctgtcgcgcaacccgcacggttcgctggacgcgctgctcgacgac
tgcaccaccgccgccgccgaccatctcgtcggccggggcggcggcgacccgttcgacgag
gcacagttcgcccggctcgccgagctgctgcggatgcggctgcccgcgaccaccctgcag
gtcctcgacgcggcacgcggcgtcctcgaggcctggcacgccaccggcgcgaagctcgcc
gacctgcgcggacccgcgacccgcgacggcgccgccgacgtccgcgcgatcacggaccgg
ctggtcgccccggggttcgtgaccgcggccggcgcgacccggctcggtgacgtgaagcgg
tacctgcaggcctgcgaggtgcggctggacaagctgcacgccgaccccggacgcgacgcc
cgctggaccgcggagatggcgccggtcgaggccgagtaccgcgggctgctcgccgggttg
cccgagcacaccgagccgtcaccggcgctgcgcgagatcggctggatgatcgaggagctg
cgggtctcgctctacgcgcacccgatgcggacccggcacccggtgtcggtgcagcgggtc
gagcgggcgatcgacgagctgcccccgccgtcctga
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