Pseudonocardia sp. EC080610-09: AD006_09345
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Entry
AD006_09345 CDS
T04146
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AD006_09345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pseq03021
]
AD006_09345
03400 DNA repair and recombination proteins [BR:
pseq03400
]
AD006_09345
Enzymes [BR:
pseq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AD006_09345
Transcription machinery [BR:
pseq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AD006_09345
DNA repair and recombination proteins [BR:
pseq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AD006_09345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALL75459
LinkDB
All DBs
Position
1954490..1958401
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATAEGIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHNDMSTLENEMSVERRRIEQTRDADLEARAQKLESD
IAELEAEGAKGDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLDVQQLIADESI
YRELYDRYGDYFTGAMGAEAIQKLLENFDIEAEAEKLREIIRSGKGQKKLRALKRLKVVA
AFQSTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLREEAHGAGN
HYGSSAEAIMAYDRKVLHLQAPIKIRLPQVTPTAGAAAETVTEDGVWTADTTLGRVLFNE
LLPADYPFVNEPLPKKRQAMIINDLAERYSMTEVAQVLDRLKDAGFFWATRSGVTLAIDD
VVVPPKKQEILDSYEVKADQINKRYQRGALSHQERNDEMVKIWSQASEEVARSMEENFPQ
DNPIPTIVQSGAAGNMAQVRQLAGMKGLVANPKGEYIPRPIKSNFREGLSVLEYFISTHG
TRKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERAITMQVTEETADGRLIPHRY
LRTSVYARTSGEEVTAPDGTVIVRKGDDLGDPALDALVGAGIRQIRVRSALTCASATGIC
GMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHIGGVAGDDITTGLPRVTEL
FEARVPRGKAPIADVDGRIRIEDGDRFWKITLIPDDGGEEIVYEKLSKRQWLGMTSVDGA
ERPLADGDHVTVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHIE
VIVRQMLRRVTIIDSGATEFLPGALAERGEFESENRRVVAEGNEPASGRPVLMGITKASL
ATESWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPVGTGINRYRNIQVQPT
EEARAAAYALPSYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgcatcggcctggccaccgccgagggcatc
cgccagtggtcgcacggtgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacgcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctacctgctcgacctg
gctccgaaggacctcgagaagatcatctacttcgcggcgtacgtgatcacctcggtgaac
accgagctgcggcacaacgacatgtccacgctcgagaacgagatgagcgtggagcgccgg
cggatcgagcagacccgcgacgcggacctcgaggcccgcgcccagaagctcgagtccgac
atcgccgagctcgaggccgagggtgccaagggcgacgtccgccgcaaggtcaaggacggc
ggcgagcgggagatgcgccagctccgcgaccgtgcccagcgcgagctggaccggctcgac
gagatctggacgacgttcaccaagctcgacgtccagcagctcatcgcggacgagtccatc
taccgcgagctgtacgaccgctacggcgactacttcaccggcgccatgggtgccgaggcg
atccagaagctcctggagaacttcgacatcgaggccgaggccgagaagctgcgcgagatc
atccggtccggcaagggccagaagaagctgcgtgcgctcaagcgcctgaaggtcgtcgcg
gcgttccagtccaccggcaactcgccgatgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtcggacctg
aacgacctgtaccgccgggtcatcaaccggaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggagtccgtcgacgcg
ctgttcgacaacggccgtcgcggccggccggtgaccggaccgggcaaccgcccgctcaag
tcgctgtccgacctcctgaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcaccccgtgctgctgaaccgt
gcgccgacgctgcaccgtctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgcgtgctgatgctg
tcctcgaacaacatcctgtccccggcgtccggccgcccgctggcgatgccccgcctggac
atggtgacgggtctgttccacctgacccggctgcgcgaggaggcccacggggccggcaac
cactacggctcctcggccgaggcgatcatggcctacgaccgcaaggtgctccacctgcag
gcgccgatcaagatccggctcccgcaggtcacgccgaccgcgggtgccgcggccgagacg
gtcaccgaggacggcgtctggacggccgacaccaccctcggccgggtgctgttcaacgag
ctgctcccggcggactacccgttcgtcaacgagccgctgccgaagaagcgccaggcgatg
atcatcaacgacctggccgagcggtactcgatgaccgaggtcgcgcaggtcctggaccgc
ctcaaggacgccggcttcttctgggcgacccgctcgggcgtcaccctggcgatcgacgac
gtcgtcgtcccgccgaagaagcaggagatcctggactcgtacgaggtcaaggccgaccag
atcaacaagcgctaccagcgcggcgccctgtcgcaccaggagcgcaacgacgagatggtc
aagatctggtcgcaggcctcggaggaggtcgcgcggtccatggaggagaacttcccccag
gacaacccgatcccgacgatcgtgcagtccggtgccgcgggcaacatggcccaggtccgc
cagctggcgggcatgaagggcctggtggcgaaccccaagggtgagtacatcccgcggccc
atcaagtcgaacttccgcgagggcctgtcggtgctggagtacttcatctccacgcacggc
acccggaagggtctggcggacaccgcgctgcggaccgccgactcggggtacctgacccgg
cgtctggtcgacgtctcgcaggacgtcatcgtccgcgaggtggactgcggcaccgagcgt
gcgatcaccatgcaggtcaccgaggagacggccgacggccgcctgatcccgcaccggtac
ctgcgcacctcggtgtacgcccgtacctccggtgaggaggtcaccgcgcccgacggcacg
gtgatcgtccgcaagggcgacgacctgggcgacccggcgctggacgccctggtcggtgcc
ggcatccggcagatccgggtgcggtccgcgctgacctgcgcctcggcgaccggcatctgc
ggcatgtgctacggccgctcgatggccaccggcaagctggtggacgtcggcgaggccgtc
ggcatcgtcgccgcgcagtccatcggtgagccgggcacgcagctgacgatgcgtaccttc
cacatcggtggtgtggccggcgacgacatcacgaccggtctgccgcgtgtcaccgagctc
ttcgaggcccgggtgccgcggggcaaggcgccgatcgccgacgtcgacggacgcatccgc
atcgaggacggcgaccgcttctggaagatcacgctgatcccggacgacggcggcgaggag
atcgtctacgagaagctgtccaagcggcagtggctcgggatgacctcggtcgacggtgcc
gagcggccgctggccgacggcgaccacgtgacggtcggtcagctgctcctcgagggcacg
gcggacccgcacgaggtgctgcgcgtcatgggcccgcgtgaggtgcagctgcacctcgtg
cgggaggtgcagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatcgag
gtcatcgtccggcagatgctccgccgggtgacgatcatcgactccggtgcgaccgagttc
ctgcccggcgcgctcgccgagcgcggcgagttcgagtcggagaaccgccgggtcgtcgcc
gagggcaacgagccggcctccggccgcccggtgctcatggggatcaccaaggcctcgctg
gcgacggagtcgtggctgtccgcggcctcgttccaggagaccacccggatcctcaccgat
gccgcgatcaacggaaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatcggc
aagctgatcccggtgggtaccggcatcaaccggtaccggaacatccaggtccagccgacc
gaggaggcccgcgcggccgcctacgcgctgccgagctacgacgacggctactacagcccc
gacgtgttcggcacgggcaccggtgccgcggtgccgctggacgactacgacttcgggcgc
gactaccgctga
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