Pseudonocardia sp. EC080610-09: AD006_20035
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Entry
AD006_20035 CDS
T04146
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AD006_20035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseq03019
]
AD006_20035
03400 DNA repair and recombination proteins [BR:
pseq03400
]
AD006_20035
Enzymes [BR:
pseq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AD006_20035
Messenger RNA biogenesis [BR:
pseq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AD006_20035
DNA repair and recombination proteins [BR:
pseq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AD006_20035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALL78919
LinkDB
All DBs
Position
4331857..4333662
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AA seq
601 aa
AA seq
DB search
MLRRVFGYDAFRGDQEAIVSHVTGGGDALVLMPTGGGKSLCYQVPALARSGTGVVVSPLI
ALMQDQVDALRALGVRAGFLNSTQDADERRLTEQEFLAGELDLLYLAPERLRVESTVRLL
ERGRIALFAIDEAHCVAQWGHDFRPDYLLLSELPKRWPDVPRIALTATATDATRTEIAQR
LQLTGARHFVASFDRPNIRYRIAPKNEPRKQLLDLLRSEHPGDAGIVYCLSRKSVEQTAE
FLGSQGIAALPYHAGLDAEVRRRNQSRFLRDDGLVMVATIAFGMGIDKPDVRFVAHLDLP
KSVEGYYQETGRAGRDGEPSTAWLAYGLADVVQQRKMIDDGEGDAAHKRRLAQHLDAMLA
LCETTECRRAQLLRYFGERPATEACGNCDTCLTPVSSWDGTVAAQKVLSTVWRLKKERNQ
EFGAGQVVDILLGKRTPKVDQHRHHELSVFGVGTELTDVAWRNVLRQLVARGLLTVGGTY
STLRFTDDSPAAMRGEQKVMLRTEPERTARSSRSRGGSKPAVEMPAEVAPVFERLRAWRA
SAAKEQGVPAYVIFHDATLREIATRAPADRAALGTISGIGEGKLARYGDQVIDVLRGGDD
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcggcgggtgttcggctacgacgcgttccgcggtgaccaggaggcgatcgtctcc
cacgtcaccggcggcggcgacgcgctggtgctcatgcccaccggtggcgggaagtcgctc
tgctaccaggtcccggcgctcgcccggtccggcaccggcgtcgtcgtctcgccgctgatc
gcgctgatgcaggaccaggtggacgcgctgcgggcgctcggcgtccgcgccgggttcctc
aactccacccaggacgccgacgagcggcgcctcaccgagcaggagttcctcgccggcgag
ctggacctgctctacctcgccccggagcggctgcgggtcgagtcgaccgtgcgcctgctc
gagcgcggccggatcgcgctcttcgcgatcgacgaggcgcactgcgtcgcgcagtggggg
cacgacttccggcccgactacctgctgctctcggagctgccgaagcgctggccggacgtg
ccgcggatcgcgctcaccgcgaccgccaccgacgccacccgcaccgagatcgcgcagcgg
ctccagctgaccggggcgcggcacttcgtcgcgagcttcgaccggccgaacatccggtac
cgcatcgcgccgaagaacgagccgcgcaagcagctgctggacctgctgcgctccgagcac
cccggtgacgcaggcatcgtctactgcctgtcccgcaagtcggtcgagcagaccgcggag
ttcctcggctcgcaggggatcgccgcgctcccctaccacgcgggtctcgacgccgaggtc
cgccgccgcaaccagtcccgcttcctgcgcgacgacggcctggtgatggtcgcgacgatc
gccttcggcatggggatcgacaagcccgacgtccggttcgtcgcgcacctggacctgccg
aagtcggtcgagggctactaccaggagaccggtcgtgcgggccgggacggcgagccgtcg
acggcgtggctggcctacgggctggccgacgtcgtccagcaacggaagatgatcgacgac
ggcgagggcgacgccgcgcacaagcggcgcctggcccagcacctcgacgcgatgctcgcg
ctgtgcgagaccaccgagtgccgccgcgcgcagctgctgcgctacttcggggagaggccc
gccaccgaggcgtgcggcaactgcgacacctgcctgacgccggtgtcgtcgtgggacggc
acggtcgccgcgcagaaggtcctctcgacggtgtggcggctcaagaaggagcgcaaccag
gagttcggcgccgggcaggtcgtcgacatcctgctcggcaagcgcaccccgaaggtggac
cagcaccgccaccacgagctgtcggtgttcggcgtcggcaccgagctgaccgacgtcgcg
tggcgcaacgtgctgcgacagctggtcgcgcgcgggctgctgaccgtcggcgggacctac
tcgacgctgcggttcaccgacgactcccccgccgcgatgcgcggcgagcagaaggtcatg
ctgcgcaccgagccggagcggacggcgcggtcgtcgcggtcgcggggcgggtcgaagccg
gcggtcgagatgccggccgaggtcgcgccggtgttcgagcggctgcgggcctggcgcgcg
tcggcggcgaaggagcagggcgtgcccgcctacgtgatcttccacgacgcgacgctgcgc
gagatcgcgacgcgggcacccgccgaccgtgccgcgctgggcacgatctccgggatcggc
gagggcaagctcgcccggtacggcgaccaggtcatcgacgtcctgcgcgggggtgacgac
gggtga
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