Pseudonocardia sp. EC080610-09: AD006_23115
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Entry
AD006_23115 CDS
T04146
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03030
DNA replication
pseq03430
Mismatch repair
pseq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AD006_23115
03430 Mismatch repair
AD006_23115
03440 Homologous recombination
AD006_23115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pseq03032
]
AD006_23115
03400 DNA repair and recombination proteins [BR:
pseq03400
]
AD006_23115
Enzymes [BR:
pseq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AD006_23115
DNA replication proteins [BR:
pseq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AD006_23115
DNA repair and recombination proteins [BR:
pseq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AD006_23115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ALL77479
LinkDB
All DBs
Position
complement(5012786..5016343)
Genome browser
AA seq
1185 aa
AA seq
DB search
MASSGAGSFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKA
KAAGVKPIIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNL
FRLSSLASLEGYYYKPRMDRELLEQYGTGLIGTTGCPSGEVARLLQQDDFEGACQAASDY
RDIFGKDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEVLL
CVQTGKTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTGQD
LQPKAPVPEGETEESWLIKEVERGLHDRFPNGITEQYRTQANYEVGVIIKMGYPGYFLVT
ADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFLNPDRVSMPDIDM
DFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVADRISKA
MPPAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARGLEGLKRQWGVHA
AGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLRNLTILDDALENI
TLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMAPSEFEHISAVGA
LYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIVYQEQVMSIAQVL
AGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLWDILLPFSDYAFN
RAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECRRMGVTVLPPDVN
DSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFLRKVDAVVCNKKV
VESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGSMDGSGGDDGDEL
GGIFDVKVPEEEWDSKHKLAVEREMLGLYVSGHPLQGLEQALAAKADTSIADIVEGSVAE
GGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFPRAYQVVGVDVAEDAIVLV
KARVNKRDDRISLIANDLAVPELAAAGEGGLPIRVSLRTDQCTPERVSKLKEVLTHHPGT
SEVHLSLVYGSKITALRLDDSLKVMHTSALMGDLKALLGPGCLGG
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtccggagcaggctccttcgtccatctgcacacccacaccgagttctcgatg
ctggacggggcggcccggctcgacgacctcttctccgaggccgtcaagaacgacatgtcc
gcggtcgcgatgaccgaccacggcaacgtctacggcgccttcgagttctggcgcaaggcc
aaggcggcgggcgtcaagccgatcatcggcatggaggggtacctcgcgcccggttcgcgg
cacgagcggaagcgggtcgcgctcggcggcagcaaccccggcgccgccgacaagaacccc
gacctcatgtacacccacatgacgctgctggccgagaacaccgaggggatgcacaacctc
ttccggctctcgtcgctcgccagcctcgaggggtactactacaagccccgtatggaccgc
gagctgctcgagcagtacggcacgggtctcatcgggacgaccggctgcccgtccggcgag
gtcgcccgcctgctccagcaggacgacttcgagggtgcctgccaggccgcgtccgactac
cgggacatcttcggcaaggacaacttcttctgcgagttgatggaccacgggatcgagatc
gagaagcgggtccaggaggacctgttcgcgctgaagaagcgcctcgacctgcccggtctg
gccaccaacgacctgcactacacctacccggacgacaccaaggcgcacgaggtgctgctc
tgcgtccagaccgggaagactctcgccgacccgaaccggttcaagttcgacgcgcaggac
ttctacctcaagtccgcgaccgagatgcgcgagctgtgggacccgatccaccccgaggcg
tgcgacaacaccctctgggtcgccgagcgctgcgacatcgacttcaccaccggccaggac
ctgcagcccaaggctccggtgcccgagggggagaccgaggagtcctggctgatcaaggag
gtcgagcggggcctgcacgaccggttcccgaacggcatcaccgagcagtaccggacgcag
gcgaactacgaggtcggcgtcatcatcaagatgggctaccccggctacttcctggtgacg
gcggacctcatccggcacgccaagtcggtcggcatccggtgcggccccggccgcggctcg
gccgccgggtcgctggtcgcctacgtcctgggcatcaccgacctcgacccgatccggcac
aagctgatcttcgagcggttcctcaacccggaccgcgtgtccatgcccgacatcgacatg
gacttcgacgagcgccggcgcggcgagatgatccgctacgtcaccgagaagtacggcgag
gaccggatcgcgcagatcatcacctactccacgatcaaggcgaaggccgcgatcaaggac
tcggcgcgggtgctgttcggccagcccggctactcggtcgccgaccggatctccaaggcg
atgccgcccgccgtgatgggcaaggacatcccgctctcggggatcttcgacccgtcgcac
aagcggtactccgaggccaccgaggtccgcgcgctctacgaggcggacccgcaggtcaag
gagatcgtcgacaccgcgcggggcctggagggcctgaagcgccagtggggcgtccacgcg
gccggcgtgatcatgtcgtcgacgccgctgatcgacgtcatcccgatccagcgccgcgag
tccgacggcgccgtcatcacccagttcgacatgggcgtctgcgagaccatcggtctcctc
aagatggacttcctggggctgcggaacctcacgatcctcgacgacgccctggagaacatc
accctcaacggcaagcccgaggtcgacctcgaccacgtcgagctggacgacgggccgacc
tacgagctgctctcccgcggggacacgctcggcgtgttccagctggacggcggcccgatg
cgggacctgctgcgccggatggcgccgtcggagttcgagcacatctctgcggtcggtgcg
ctctaccgccccggcccgatgggcgcgaacgcgcacaacgactacgccgaccgcaagaac
ggccgccaggagatcacgccgatccacccggagctggcggagcccctcaaggacgtcctc
ggcgagaccttcggcctgatcgtctaccaggaacaggtcatgtccatcgcgcaggtgctg
gcgggctactcgctcggccaggcggacctgctccgccgcgcgatgggcaagaagaagaag
gagatcctggacaaggagtacgtcggcttcgcccagggcatgaaggacaacggctactcc
gccgatgccgtcaagacgctctgggacatcctgctcccgttctccgactacgcgttcaac
cgcgcgcactccgccgcgtacggcgtcgtctcgtactggaccgcgtacctcaaggcgaac
tacccggccgagtacatggccggcgtcctcacctcggtccgcgacgacaaggacaaggcc
gccgtctacctggcggagtgccgccggatgggcgtcacggtgctcccgccggacgtcaac
gactcggtccgcaacttcgccccggtcggcaacgacatccggttcggtctcggcggcatc
cgcaacgtcgggcacaacgtggtcgacgcgatcgtcgccgcgcgccgggagaaggggaac
ttcgtcgacttctccgacttcctgcgcaaggtcgacgcggtggtctgcaacaagaaggtc
gtcgagtcgctgatcaaggccggggcgttcgactcgctcggtcactcccgcaagggcctg
ctgctggtgcacgccgacgcgatcgacgcggtgatgagcaccaagaaggccgcgtcgctg
ggccagttcgacctgttcgggtcgatggacggcagcggcggcgacgacggcgacgagctc
ggcggcatcttcgacgtgaaggtgcccgaggaggagtgggactccaagcacaagctcgcc
gtcgagcgcgagatgctgggcctctacgtctcggggcacccgctgcagggcctcgaacag
gcgctcgcggcgaaggccgacacctcgatcgccgacatcgtcgagggctcggtcgccgag
ggcggccaggtcaccgtcggcggcatcctcgcgaacgtgaaccgccgggtgaacaagaac
ggcgagccgtgggcgtcggcccagatcgaggacctcgccggtgggatcgaggtgctgttc
ttcccgcgggcctaccaggtcgtcggcgtcgacgtcgccgaggacgcgatcgtgctggtc
aaggcccgggtgaacaagcgcgacgaccggatctcgctgatcgcgaacgatctcgcggta
cccgagctggccgccgccggggagggcgggctgccgatccgggtgagcctgcggaccgac
cagtgcacccccgagcgcgtctcgaagctcaaggaggtgctgacccaccacccgggcacc
tccgaggtgcacctgtcgctggtctacggcagcaagatcaccgccctgcggctggacgac
tcgctgaaggtcatgcacacctcggcgctgatgggcgacctgaaggcgttgctcgggccg
ggctgcctgggcggctga
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