Pseudonocardia sp. EC080610-09: AD006_23575
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Entry
AD006_23575 CDS
T04146
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pseq03016
]
AD006_23575
Enzymes [BR:
pseq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AD006_23575
Transfer RNA biogenesis [BR:
pseq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AD006_23575
Prokaryotic type
tRNA splicing ligases
AD006_23575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALL77542
LinkDB
All DBs
Position
complement(5124402..5125607)
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AA seq
401 aa
AA seq
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MFTLTGTAAPVRLWTDPESVEPGALTQLRNCAALPWTHGVAVMPDVHQGYGATVGSVVAM
RDAVSPGAVGVDIGCGMSAVRTDLTAADLPDSLARVRSQVERDVPVGRAGHRDGPDLARL
GIEDGYDWTAFWTGFDRLHHLRDASWTSEDALRTKAHRQLGSLGSGNHFLELCTDGDGRV
WLMLHSGSRGIGDVLANLHIEKAKELPHNQDLPDRDLAVFLSGTPQMDAYRADLFWAQEY
ARLNRHVMMRLFEAALARALGRPVAFEPEVSCHHNYVSEETYDGVELVVTRKGAISTEGG
RRGIIPGSMGTGSFIVSGLAAPESYCSASHGAGRRMSRGAARRQFSVADLQAQTEGVECR
KDAGVLDEIPGAYKDLDTVMSEQTDLVRVEHRLRTILCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttcaccctcaccggcaccgccgcaccggtccgtctctggacggacccggagtcggtc
gagccgggcgcactgacccagctgcgcaactgcgcggcgctgccctggacgcacggcgtc
gccgtcatgccggacgtgcaccagggctacggcgcgaccgtgggctcggtcgtcgccatg
cgcgacgccgtctccccgggcgccgtcggcgtcgacatcgggtgcggcatgtccgcggtc
cgcaccgacctgaccgcggccgacctccccgactcgctcgcacgcgtccggtcgcaggtc
gagcgggacgtcccggtcgggcgcgccggccaccgcgacggccccgacctggcccgcctc
ggcatcgaggacggctacgactggacggcgttctggaccgggttcgaccggctgcaccac
ctgcgcgacgcgtcgtggaccagcgaggacgcgctccgcacgaaggcacaccggcagctc
ggctcgctcggctccggaaaccacttcctcgagctgtgcaccgacggcgacggccgggtc
tggctgatgctgcactccggctcgcgcgggatcggcgacgtcctcgcgaacctgcacatc
gagaaggcgaaggagctgccgcacaaccaggacctgcccgaccgcgacctcgccgtgttc
ctgtccgggacaccgcagatggacgcctaccgggccgacctcttctgggcacaggagtac
gcccggctcaaccggcacgtgatgatgcggctgttcgaggcggcgctcgcccgcgcactg
ggccggccggtggcattcgagcccgaggtgtcctgccaccacaactacgtgtccgaggag
acctacgacggtgtcgagctcgtcgtgacccgcaagggcgcgatctccaccgagggcggg
cgccgggggatcatccccgggtcgatggggaccggttccttcatcgtctccggcctggcg
gccccggagtcgtactgctcggcgtcgcacggtgccgggcggcggatgtcgcggggagcg
gcgcgccggcagttctcggtggccgacctgcaggcccagaccgagggcgtcgagtgccgg
aaggacgcgggcgtgctcgacgagatccccggcgcctacaaggacctggacacggtgatg
tccgagcagaccgacctcgtccgggtggagcaccggctccgcacgatcctctgtgtgaag
gggtag
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