Pseudonocardia sp. EC080610-09: AD006_25810
Help
Entry
AD006_25810 CDS
T04146
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AD006_25810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseq03019
]
AD006_25810
03016 Transfer RNA biogenesis [BR:
pseq03016
]
AD006_25810
Enzymes [BR:
pseq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AD006_25810
Messenger RNA biogenesis [BR:
pseq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AD006_25810
Transfer RNA biogenesis [BR:
pseq03016
]
Prokaryotic type
tRNA degradation factors
AD006_25810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ALL77872
LinkDB
All DBs
Position
complement(5607285..5609564)
Genome browser
AA seq
759 aa
AA seq
DB search
MTDVISEDGVHESTAVIDNGAYGTRTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASK
RPKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLR
NEIQVVVTVMSLDPKDPYDVVAINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQWV
AFPTHDQLERAAFDMVVAGRVVGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVADGLE
AAKPFIRSLCVAQQQLADVAAKPTADYPVFPAYQPDALEAVTEAVEQELAQALTIAGKQE
RETRTDEIKASVLEKLGERFTGRESELGNAFRALNKKLIRRRILTDQVRIDGRGLTDIRP
LSAEVEVIPRAHGSALFERGETQILGVTTLNMLRMEQTIDSLGPETSKRYLHHYNFPPFS
TGETGRVGSPKRREIGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCAS
TMSLLNAGVPLKAPVAGIAMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKDFV
TALQLDTKLDGIPSEVLAAALSQAKDARLTILEVIGEAIDGPDEMSKYAPRVTAVKVPVD
KIGEVIGPKGKMINSITEKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKV
GERFLGTVVKAAAFGAFVSLVPGKDGLIHISKLGNGKRIGKVEDVCKVGDKIRVEVTDID
NRGKISLVPVQEGGENGEAPADAETGAEAPAEAEAANQS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtcatcagcgaggacggcgtgcacgagagcaccgccgtcatcgacaacggt
gcctacggcacgcgcaccgtccggttcgaggccggccggctcgcccgccaggccgccggt
tcggtcgtcgcgtacctggacgacgagaccatgctgctgtccgccacgaccgcctcgaag
cggccgaaggaccagttcgacttcttccccctgacggtcgacgtcgaggagcggatgtac
gcggcgggccggatccccggctcgttcttccgccgcgagggccgccccggcaccgacgcg
atcctgacctgccgtctcatcgaccggccgctgcgcccgtccttcgtggacggtctccgc
aacgagatccaggtcgtcgtgacggtcatgtcgctcgacccgaaggacccctacgacgtc
gtggcgatcaacgccgcgtcggcgtccacccagctcgcgggcctgcccttctccggcccg
gtcggcggcgtccgcgtcgcgctgatcgcgaacgagaccggcaccgacacccagtgggtg
gccttcccgacgcacgaccagctcgagcgcgccgcgttcgacatggtcgtcgcgggtcgc
gtcgtcggcgacgacgtcgcgatcatgatggtcgaggccgaggccaccgagaagacgatc
gagctcgtcgacggcggcgccaacgccccgaccgaggacgtcgtggccgacggcctggag
gccgcgaagcccttcatccgctcgctgtgcgtcgcgcagcagcagctcgccgacgtcgcg
gccaagccgaccgccgactacccggtgttcccggcctaccagccggacgcgctcgaggcc
gtcaccgaggccgtcgagcaggagctggcgcaggcgctgaccatcgccggcaagcaggag
cgcgagacccgcaccgacgagatcaaggcgtcggtgctggagaagctgggcgagcgcttc
accggccgcgagtccgagctgggcaacgcgttccgcgcgctcaacaagaagctcatccgc
cgccggatcctgaccgaccaggtccggatcgacggccgcggcctgaccgacatccggccg
ctctcggccgaggtcgaggtcatcccgcgggcgcacggctcggcgctgttcgagcgtggc
gagacccagatcctgggtgtcaccacgctgaacatgctgcgcatggagcagacgatcgac
tcgctcggtccggagacctccaagcgctacctgcaccactacaacttcccgccgttctcc
accggtgagaccggccgcgtcgggtcgccgaagcgccgcgagatcggccacggcgccctc
gccgagcgggcgctgctcccggtcctgccggaccgcgaggagttcccctacgcgatccgc
caggtctccgaggcgctgggctccaacgggtccacctcgatgggctcggtctgcgcgtcg
acgatgtcgctgctcaacgccggtgtgccgctgaaggcgccggtcgcgggcatcgcgatg
ggcctggtctccgacgaggtcgacggccagacccgctacgtcgcgctgaccgacatcctc
ggcgccgaggacgcgttcggcgacatggacttcaaggtcgccggcaccaaggacttcgtg
acggcgctgcagctggacaccaagctggacggcatcccgtccgaggtgctggccgccgcc
ctgagccaggccaaggacgcccgcctgaccatcctcgaggtgatcggcgaggccatcgac
ggcccggacgagatgtccaagtacgcgccgcgggtcaccgcggtgaaggtcccggtcgac
aagatcggcgaggtcatcggcccgaagggcaagatgatcaactcgatcaccgagaagacc
ggcgccgacatctcgatcgaggacgacggcacgatctacgtcggtgcgaacgacggcccc
tccgcggaggaggcgatcggcatgatcaacgcgatcgccaacccgcagctgccgaaggtc
ggcgagcggttcctgggcacggtggtcaaggccgccgccttcggtgccttcgtctcgctg
gtccccggcaaggacggtctgatccacatctcgaagctcggcaacgggaagcggatcggc
aaggtcgaggacgtctgcaaggtcggcgacaagatccgcgtcgaggtcaccgacatcgac
aaccgcggcaagatcagcctcgtcccggtccaggagggcggggagaacggtgaggccccg
gcggacgccgagaccggcgccgaggctccggctgaggccgaggccgcgaaccagagctga
DBGET
integrated database retrieval system
