Pseudonocardia sp. EC080610-09: AD006_26355
Help
Entry
AD006_26355 CDS
T04146
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AD006_26355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseq03400
]
AD006_26355
Enzymes [BR:
pseq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AD006_26355
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AD006_26355
DNA repair and recombination proteins [BR:
pseq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AD006_26355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DUF7560
HpcH_HpaI
Zn_ribbon_3
DZR
zf-C2HC_3
Zn_Ribbon_TF
IBR_1
Motif
Other DBs
NCBI-ProteinID:
ALL77953
LinkDB
All DBs
Position
complement(5721580..5722461)
Genome browser
AA seq
293 aa
AA seq
DB search
MPELPEVEVVRRGLADHVLDRRVAAVEVLHPRAVRRHPTGSADFTARLTGRTLRAAARRG
KYLWLELDTAEAGDDALLAHLGMSGQMLVENPAEPDEKHLRVRLRFDDDGPELRFVDQRT
FGGLSVHPLAPASGGGLLPEPVAHIARDPMDPAFSADDTVAALRRRRTEVKRALLDQTVV
SGIGNIYADEALWRARLHGLRPTEKLTRAQGHAVLDAATTVMTAALAQGGTSFDALYVNV
NGASGYFDRSLNVYGQVDRACPRCGTPIRRDAFMNRSSFTCPRCQPRPRTPRT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctccccgaggtcgaggtcgtccgccggggcctcgccgaccacgtcctggac
cgccgggtcgccgccgtcgaggtgctgcacccgcgggccgtccggcggcatcccaccggc
tcggcggacttcaccgcccggctgaccgggcggacgctgcgtgcggccgcccgccgtggc
aagtacctgtggctcgaactcgacacggccgaggccggggacgacgcgctcctcgcgcac
ctcgggatgtccggccagatgctcgtcgaaaatccggccgagcccgacgagaagcacctg
cgggtccgcctccgcttcgacgacgacggtcccgagctgcgcttcgtcgaccagcgcacg
ttcggcgggctgtcggtccatccgctcgccccggcgtccggcgggggcctgctgcccgag
ccggtcgcgcacatcgcgcgcgacccgatggacccggccttctccgccgacgacaccgtc
gccgcgctgcgccgcaggcggaccgaggtcaagcgggcgctgctggaccagaccgtggtc
tcgggcatcggcaacatctacgccgacgaggccctctggcgggcgagactgcacggcctg
cggcccaccgagaagctcacccgggcgcaggggcacgccgtgctcgacgcggccaccacc
gtcatgaccgcggcgctcgcccagggcgggacctcgttcgacgcgctgtacgtcaacgtc
aacggggcgtcggggtacttcgaccggtccctgaacgtctacggacaggtggaccgggcc
tgcccgcgctgcggcacgccgatccggcgggacgcgttcatgaaccgctcgtccttcacc
tgcccgcgctgccagccgagaccccgcacgccgcgcacctga
DBGET
integrated database retrieval system
