Pseudonocardia sp. EC080610-09: AD006_28115
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Entry
AD006_28115 CDS
T04146
Name
(GenBank) RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
pseq
Pseudonocardia sp. EC080610-09
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pseq03021
]
AD006_28115
Transcription machinery [BR:
pseq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AD006_28115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
KORA
DUF7343
HTH_24
MarR
HTH_3
HTH_23
MarR_2
HTH_AraC
HTH_15
NirdL-like_HTH
HTH_31
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ALL79229
LinkDB
All DBs
Position
complement(6112415..6113227)
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AA seq
270 aa
AA seq
DB search
MDTATVATDDEYAHLDAPLRAFAAAPGDDPERAALREQLARGFHPVVRHIAGRYRHRGEP
ADDLEQVGAIGLLNALDRFDPEQGTPFLAYAVPTITGEIRRHFRDRTWSMRVPRRLKDFQ
TRMTRAQEELAVRHGRAPKVSELAEHLGTSREEVIEGLQAQDSYRSDSLDRLAGDTESPL
GEIVGGADAGIGTVEDREALRPALRRLPERERTILLLRFFGNRTQTQIAEEVGLSQMHVS
RLLARSLATLRRHLVEEPGGDSVSPMSDAG
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgcgaccgtcgctaccgacgacgagtacgcgcacctcgacgcgccgctgcgg
gccttcgcggccgcaccgggcgacgacccggagcgcgccgcactgcgcgagcagctcgca
cggggattccatccggtcgtccggcacatcgccgggcgctaccggcaccgcggtgagccc
gccgacgacctcgagcaggtcggcgcgatcggcctgctgaacgccctcgaccggttcgac
ccggagcaggggaccccgttcctcgcctacgcggtcccgacgatcacgggggagatccgg
cggcacttccgggaccggacctggtcgatgcgggtcccccggcggctgaaggacttccag
acccggatgacccgcgcccaggaggagctggcggtgcgccacggccgggcaccgaaggtg
tccgagctggccgagcacctcgggaccagccgggaggaggtcatcgagggtctgcaggcg
caggactcctaccggtcggactcgctcgaccggctcgccggtgacaccgagagcccgctc
ggcgagatcgtcggaggggccgacgccggcatcggcaccgtcgaggacagggaggcgttg
cgcccggcgttgcgccggctccccgagcgcgagcggaccatcctgctgctgcggttcttc
ggcaacaggacgcagacccagatcgccgaggaggtcgggttgtcccagatgcacgtctcc
cggctgctcgcccgcagcctcgccacgctgcgccggcacctcgtcgaggagcccggtggg
gactccgtgtccccgatgtccgacgcggggtga
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