Pseudanabaena sp. ABRG5-3: ABRG53_0066
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Entry
ABRG53_0066 CDS
T05820
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABRG53_0066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pser03019
]
ABRG53_0066
Enzymes [BR:
pser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABRG53_0066
Messenger RNA biogenesis [BR:
pser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABRG53_0066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
RM44_endonuclase
UvrD-helicase
NAD_binding_3
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BBC22323
UniProt:
A0A2Z5WSM6
LinkDB
All DBs
Position
complement(83482..84918)
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AA seq
478 aa
AA seq
DB search
MSSSAITFPVKKSSVPHKSSDPTASAKGFSALGLSEQIVRAVAARGYTQPTPIQSQAIPV
VLSGQDLLAGAQTGTGKTAGFTLPILHLLSNKVVKRSPTGKIPIRALILTPTRELAAQVE
ESVQTYGRHLPLTSMVIYGGVNINPQINRLRGGVEILVATPGRLLDHVQQGRLDLSKVEI
LVLDEADRMLDMGFIRDIKRILALLPKQRQNLLFSATFSNEIKAFASTLLNQPVLVEVAS
QNATADLVTQRIFPVDRDRKRELLTHLIKTNNWYQVLVFTRTKHGADRLVKQLHQDDIVA
MAIHGNKSQAARTRALGKFKDGSLQVLVATDIAARGLDISELPHVVNYELPNVPEDYVHR
IGRTGRAGLSGEAISLVCVDERKFLADIEKLIKRSLPQEIIDGFDPDPRAKPEPIIMGRQ
QKHQPRRGQRDSAIAKSTSSAPSKSPNQPQKKQSSRIVAKPVQANRSEHIDSHHNRNR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctgcaattacctttcctgtcaagaaatcttctgtaccccataaatcttct
gacccaaccgcatcagccaaaggtttctcggctctaggtttatctgagcaaattgtccgt
gctgtcgctgcacgcggctatacccagcccacaccaattcagtcacaagcgatccccgtt
gttctctcagggcaagatttactagcgggcgctcaaacgggtacgggcaaaaccgcagga
tttacgctgccaattttgcatttactgtctaacaaagtcgtcaagcgatcgccgactggc
aaaattccgatccgcgctctaatcctcacgcctacccgtgaactcgccgcccaagtcgaa
gaaagtgtccagacctatggcagacatctgcccctcacctcgatggtgatctatggtggt
gtgaatattaatcctcaaattaatcgcctaagaggtggggtggagattttagttgcaacc
cccggtcgtctcttggatcatgtgcagcaaggacgattagacttgtccaaggtcgaaatc
ttggtattagatgaagctgatcgcatgttggacatgggctttattcgtgatatcaagcga
attttggcactattaccaaaacaacgccaaaatcttctattttcggcaactttctccaat
gagattaaagcctttgccagtaccttactcaatcaacctgttctcgtcgaagttgctagt
cagaatgctactgctgatttagtgacacagcgaattttccctgtcgatcgcgatcgcaag
cgtgagttactcacccatctgatcaaaaccaataactggtatcaggtcttagtatttacg
cgcacgaagcatggagccgatcgccttgtgaagcaattgcaccaagatgacattgtggcg
atggcaattcatggcaataagagtcaagcggctcggactcgcgcccttggtaaatttaag
gatggtagtttacaagtattagtcgccacggatatcgctgcacggggcttagatattagc
gaacttccccatgtggttaactatgagttgcccaatgtgccagaggactatgtacaccgc
atcggtcgtacaggacgtgctggcttatcaggggaggcgatctcattggtttgtgtcgat
gagcgtaagtttctggcagacatcgagaagctcattaagcgatcgctgccccaagaaatc
attgatggctttgatcctgaccctcgtgctaagcctgaaccaatcattatgggacgacaa
cagaaacaccagcctcgacgtggacaaagggatagtgcgatcgccaagtcaacgtcatcc
gcaccaagcaaatcacctaatcaaccacagaagaaacaatctagtagaattgttgccaag
cccgttcaagccaacagatccgagcatatagattctcaccataatcgcaatcgttag
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