Pseudanabaena sp. ABRG5-3: ABRG53_0223
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Entry
ABRG53_0223 CDS
T05820
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pser03016
]
ABRG53_0223
Enzymes [BR:
pser01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABRG53_0223
Transfer RNA biogenesis [BR:
pser03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ABRG53_0223
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BBC22480
UniProt:
A0A2Z5WT38
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All DBs
Position
complement(253204..255285)
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AA seq
693 aa
AA seq
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MEKGTLVEVKLHGDRRLVVIDRPEGKKHFQAIDENGNTHTIHPREINYIIKASGENASFT
YSKIPSFLKQVENFLDPSSLEVAWEILIEDNQPTNPNDLANLLFSEISAVTSYASYCLLS
SDKIYFKQKGDLYEPRSNSQVSELKHQAEAAAQRAKLIEEFQNKLTTKLAGGEVEWTTSD
RSRLDCLERYALNGDEASDKAAAQELLSFAKRPKNEQAAFQMLVDLGIWSEHENLNLLRS
QIPIRFANELIAAAQECFTAPIPDYMGDLRRDLTHLHVYTIDDISTTEIDDGLSIETLAD
GRKRIWIHIADPTRWLDPDSPLDRDARKRGTSIYLPTGVIPMFPIELAAGPMSLIENKVC
HAVSFAVDLDEVGAISHYEIVTSLVKPNYRLTYEDVEEMLQLGVEDDLDRLADFARLRKK
WRVDQGAIEIHLPDTSVKVDSKNGDRLTLELMEDTFSRQLVAEMMILAGEVAAKFAQTNN
IPIPYRYQEQPELPPLDTLMQLPSGPVREFAICRCMTKGSLGLYASRHAGLGLDAYAQVT
SPIRRYSDLLAHWQIKAFLRGEPLPFTAEMLTAILQAIDPAIWDANQVERQSVKYWSLEY
LRRNKDVVWEALMLDWLRENEKLALVLIEDLGLKLPMRINRQIQVGDNLQIRTSDVDPRK
DIIYFQEVQQSTSPLEMEMERNSDRLESEYATL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaaggtacactagtcgaagtgaaattgcatggcgatcgccgccttgtcgtgatt
gatcgtcctgaaggcaaaaagcactttcaagcgatcgatgaaaatggcaatacccacacc
atccacccccgcgagattaattacattattaaagctagtggtgagaatgctagctttacc
tattcaaaaatcccctcatttttaaaacaagtcgaaaattttctcgatccttctagcctt
gaagttgcttgggaaattttgattgaagacaatcaacccactaaccctaacgatcttgcc
aatctcctattttcagaaatttctgccgttacgtcctacgcttcctattgcctattaagt
agtgacaaaatttatttcaagcaaaagggcgatctctacgaaccccgctcaaattctcaa
gtctcagagctaaaacatcaagcggaagccgccgcccaacgcgctaaattgattgaggag
tttcagaataaactaacgacgaagctagcgggtggtgaggtcgaatggacaactagcgat
cgcagtcgcttagattgtctagaacgttacgcccttaatggtgatgaagcttcagataaa
gccgccgcccaagagcttttaagctttgctaaacgtcctaaaaatgagcaagctgcattt
caaatgttggttgaccttggcatttggagcgaacatgaaaatctaaatttactgcgtagt
cagattccgattcgctttgctaatgaattgattgccgccgcacaggaatgtttcactgcg
ccaattcctgactatatgggagacctgcggcgcgatctcacccatctgcatgtctatacg
attgacgatatcagcactaccgaaattgatgatggtctgagtatcgagaccttagctgat
ggtcgcaagcgtatttggattcatattgctgatcccacacgctggcttgatcccgatagt
cccttagatcgagatgcgcgtaagcgtggcacaagtatctatttgcccacaggcgtgatc
ccgatgttccccatcgaactagcagcaggtcccatgagcttgatcgagaataaggtctgt
catgcggtttcttttgcggtcgatctggacgaggtgggtgcaattagccattacgaaatt
gtgacaagtttggtgaagccaaactatcgcctcacctatgaagatgtcgaagaaatgcta
caactcggtgtagaagatgatctcgatcgccttgctgactttgcccgtcttcgcaaaaag
tggcgcgtcgatcagggggcgatcgaaattcatttacctgataccagcgtcaaggttgac
tcgaaaaatggtgatcgcctgaccttagaactaatggaggacacattctcgcgccaacta
gtcgccgagatgatgatccttgctggcgaggtcgccgccaaatttgcccaaaccaataac
atccccatcccctatcgctaccaagaacagcccgaattaccgcccctcgataccttaatg
cagttgccttcaggtcccgttcgcgaatttgcgatctgtcgctgtatgaccaaaggctca
ctaggtctctatgcttcacgccatgcaggtttaggacttgatgcttacgcacaggtgaca
tcacccattcgccgctatagcgatttgctagcccattggcagatcaaggctttcttgcgg
ggtgagcctttgccctttacggcggaaatgctgacggcaattttacaggcgatcgatcct
gcgatttgggatgccaatcaggtcgagcgacaatcggtcaaatattggagcttagaatat
ctgcgtcgcaataaggatgtggtgtgggaagcgctgatgctggattggttgcgcgaaaat
gaaaagctagctttagtcttgatcgaagatttgggcttgaagttaccgatgcgaatcaat
cgccaaatccaagtgggtgacaatctccaaatcagaacctccgatgtcgatccccgcaag
gacattatttatttccaagaagtgcagcagtccacatctcccctagaaatggagatggaa
agaaatagcgatcggcttgaatcggagtatgcaaccctttga
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