Pseudanabaena sp. ABRG5-3: ABRG53_0873
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Entry
ABRG53_0873 CDS
T05820
Symbol
sigF
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03090
RNA polymerase sigma-B factor
Organism
pser
Pseudanabaena sp. ABRG5-3
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pser03021
]
ABRG53_0873 (sigF)
Transcription machinery [BR:
pser03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABRG53_0873 (sigF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_Crp_2
KORA
HTH_38
HTH_3
HTH_50
Trp_repressor
HTH_Tnp_ISL3
HTH_10
HTH_17
HTH_8
LacI
HTH_24
SpoIIID
HTH_23
Sigma70_ECF
Cro
Motif
Other DBs
NCBI-ProteinID:
BBC23130
LinkDB
All DBs
Position
complement(971327..972163)
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AA seq
278 aa
AA seq
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MTTAALTIASDIPTQSSITTHKVREFSAADKTTTLELLKQYRKAPSAYLRDRIVRLNIGL
VKKEVHFWADRHSELYDDLLQVGALGLIGAVDRFELNRGYAFSSFAVRYIRGEIQHYLRD
KSSAVRIPRRWMDLQQQSVRVMQKLRNTLQREPSAQEVANALGITLSEWQEAKLACQNRA
PLSLDAPIRSEEEDAASIGDLVADPKSNMQSQQDEKFRLHQALSLLEQRTREIVEFVFIE
DMPQRDVAKMLGVSAVTISRQLKKGLSTLRCVLEAEAC
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgcagcactcacgatcgcatccgacattcctactcagtcaagcatcaccacc
cataaggtacgtgagttttcggcggcggacaaaactacaaccctcgaactactcaagcaa
tatcgcaaagcaccatcggcatacctacgcgatcgcatcgtgcgcttaaatatcgggctt
gtcaaaaaagaagtacatttctgggcagatcgtcattcagaactatatgatgatttatta
caagtgggggcgttaggtctaatcggcgcagtcgatcgctttgaactaaatcgtggttat
gcctttagttccttcgcggttcgctacattcgtggcgaaattcaacattatctccgtgac
aaaagctccgcagttcgtattcctcgccgttggatggatttgcaacagcaatctgtacgt
gtgatgcagaagttacgcaacaccttacaaagagaaccttccgcacaggaagtagctaat
gctctaggaattaccctcagcgaatggcaagaagcgaaactcgcctgtcaaaatcgcgcc
ccattaagtcttgatgcgcccatccgttccgaggaagaagatgccgcttccattggcgat
ctcgttgccgatcctaagagcaatatgcaatcgcaacaggatgagaagttccgtttacac
caagctctctcacttttagagcaacgtactagagagattgtcgagtttgtctttatcgaa
gatatgcctcaaagggatgtcgccaaaatgttaggggtaagcgcagtcacaatttcccgc
caactcaaaaaaggtttatcaactttacgttgtgtattagaagcagaagcttgctaa
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