Pseudanabaena sp. ABRG5-3: ABRG53_1080
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Entry
ABRG53_1080 CDS
T05820
Symbol
rtcB
Name
(GenBank) rtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pser03016
]
ABRG53_1080 (rtcB)
Enzymes [BR:
pser01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABRG53_1080 (rtcB)
Transfer RNA biogenesis [BR:
pser03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABRG53_1080 (rtcB)
Prokaryotic type
tRNA splicing ligases
ABRG53_1080 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBC23337
LinkDB
All DBs
Position
complement(1186998..1188179)
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AA seq
393 aa
AA seq
DB search
MPFQKLDISTPKPVLSWADHDLGHAETQMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
VATKEAIVPAAVGVDIGCGMAAIKTPFHYEQLEGKLKQIRLEIEAAIPVGFNDNKEVEKP
VLNWQGWREFRDLHSGVQHLESKAMKQMGSLGGGNHFIEVCIDTDNQIWLMLHSGSRNIG
NMLAQRHIETAKDLAKLAGTSLPDKDLAYFVAGTSEFAAYWRDLQWAQAYAHFNRDVMMA
RFKKIIEKYASGGKPCKPLLTVNCHHNYAEKETHFGEDVYVTRKGAVRARTEDYGIIPGS
MGAKSFIVKGKGNAESYCSCSHGAGRLLSRSKAKDQFTLDDLIQQTKGIECRKDTGIIDE
IPAAYKPIEQVMNQQSDLVEVVATLKQIICVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcaaaaattagatatttccacacccaagccagtcttgtcttgggcagatcat
gaccttggtcatgcggaaacccaaatggcaaaaaatgtagcctccttgccctttgtgttc
aaacatgttgccctcatgcccgatgttcatctcggtaagggcgcacttgttggttctgtc
gttgccacaaaagaagcgatcgtgcctgcggctgtaggtgtggacattggttgcggcatg
gcggcgattaaaactccatttcactatgaacagttagaaggaaagctcaaacaaattcgg
ttagaaattgaagccgcgattcctgtcggttttaatgacaataaagaagtagaaaagcct
gtcctcaactggcaaggatggcgagaattccgcgatttgcatagtggtgtgcagcatcta
gaaagtaaagcgatgaagcaaatgggttccctcggtggaggaaatcacttcatcgaagtc
tgcatagataccgataatcaaatatggctcatgctacattctggttctcggaatatcggc
aatatgctagcgcaaagacatattgagacggcaaaggatttagcgaaactagcaggaact
tctctacccgataaagacctcgcctatttcgtagcaggtacttctgaattcgccgcttac
tggcgcgatttgcaatgggcgcaagcctatgcacatttcaatcgtgatgtgatgatggcg
cgatttaagaagattatcgagaagtatgctagtggcggtaaaccctgtaagcctttgcta
acggttaactgtcatcataactacgctgagaaggaaactcacttcggtgaagatgtgtat
gtcacgcgcaagggtgctgtgagagcaagaacagaagactatggcattatccccggttca
atgggagcgaagtctttcattgtcaaagggaagggaaatgctgaaagttattgctcctgc
tctcacggtgcgggacgattgctatctcgcagtaaagcaaaggatcagttcactttagat
gatttaattcagcagactaaaggaattgaatgtcgtaaggatacaggtatcattgatgag
attcctgcggcttataaaccgattgagcaggtgatgaatcagcaatccgatctcgtagaa
gtagttgcgactctgaaacagattatctgtgtgaaaggttaa
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