Pseudanabaena sp. ABRG5-3: ABRG53_2380
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Entry
ABRG53_2380 CDS
T05820
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABRG53_2380 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pser03019
]
ABRG53_2380 (recQ)
03400 DNA repair and recombination proteins [BR:
pser03400
]
ABRG53_2380 (recQ)
Enzymes [BR:
pser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABRG53_2380 (recQ)
Messenger RNA biogenesis [BR:
pser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABRG53_2380 (recQ)
DNA repair and recombination proteins [BR:
pser03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABRG53_2380 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
AAA_22
Cas3-like_C_2
AAA_11
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBC24637
UniProt:
A0A2Z5WZM9
LinkDB
All DBs
Position
2654059..2659023
Genome browser
AA seq
1654 aa
AA seq
DB search
MQITDIPTGWLLLDIERKKKANGKWKISEIALVDCTEKYHNKALERSTADLTLEKIKKST
VVLGHNIRRHDLATLFTNIPSWLNLRICDTLELSAFFLVGQQTYKLSKLYRQELGFSDPL
EDAWESFELYEKVKEVGKNLPPLVCYWAWQLLPDRYPLRLIPEGEWLNDWKNLEEKFPDA
EIKALQKYVETIPKKPNINNLGIIIFLNWLYHLDKPLAHRPKWVEETFPQFREAEAITFP
FLSQDYFSDVKLDKELKFFFGDSYSFRDNQLELVKAFLSKEVTPLGILPTGGGKSLTFQF
PALLFSKYQRGLSVIISPLQALMMDQVQNLQEQLKERHPNYVDRVALLSGTQSLSEQKEI
IDNLWQGKVDILYLSPERLRQPTIQRLLKHRLPVLWVLDEAHTLSQWGHDFRPDFMRIAG
IIKKIYQDKMHDCRWGFVTATATDKVVEDLQEKVETINSDQQSGKLFTGKLEILPRDKEY
FQWRKEITTYVESIPEDDRQDKMLSILETEHNQHPHGVAIVYVRFRKETERYAKIICDRT
NLRAEAFHGRVTAQKKQEILQKFKDKQLDVVVATNAFGMGIDREGIHTVIHIAPPATPEA
YQQEIGRLARKQGEQGKAYLFQDNEDFERTFNQENKSQISSQAMQGCWGVIKEKLKKGNG
DAWVSTLDLEKHLESDDPEILATQTRTVLYQLEEGNLLREEESCPCILYIQLNNHMALAS
HIPSSSKNLVQYLKEIGIKQKDNAINLDVQEAALSIPMYPTKIINSVRQLAKSGIISWHY
EITFKYSEKKVKKRIDEIFTRTQAFLQDLQEKEIFVEEENLIRLNNIESLEKEISSKNKN
LNFKLNDALKLLTKLKLAKYEKKSRSTINFYFNDNQSFSHWIKISLEACKIHIKNIQTVE
TALSQVFELRNWNRTDSQLVDIAEIELQLENTYLVGTNPLSILNLMQGLCLIMLGRGDSN
YDRLYHVVKGSKTNFIKSIYEPLRKHYEQRFQRIHAIKEVLKYEDEQKRIAVLRDYFLMN
LDGFNEKYFPNIDINSPPIISDILNNLSDAQKEIVKDDTSRALLVLAGPGSGKTRTIVYR
VAHLIAVSGVSPSRILVLSHTRTAAAEVRKRLYQLLGARGAQVDALTFHALASKLTGLRH
NDAPDNIGRNASTDIKFDWLLTELFTYLQENSSDYQYILIDEYQDINELQYQIVKLLGNF
RRDEDQDEQQDSFLVAVGDPNQNLFEFSGSSNKFINEFRRDWSIEDQPERCLLANYRSLP
AIVDFTNVFISQAIPNNQINQTGGKIYAHRADGIGEILWGEYSHLYHAAKWIADRIKELI
FDRQIRPNEITILAHRWKDLRFLQHFLQEIGVPYQFYDNSEKLRPSNSLIGQKILEYLRK
DPDLKVDNPTDYLEKVRLMLGYSDQDVAWQSLLATLDNCKSITQEEICYLLEEAKTIRPE
EVVLSTFHSAKGSEFAHVFVLEDGDRFDLSNNYESCTRKLYVGFTRAKDSLSILFKQGTR
QNDPALVAMSILKNSELNSGVSKIEIPTISLNHQSIRYQLILEPKDLFLSHQSVLIASGR
NRIDYYGRNWGSISIEGRSFYYEYGSSDKSGNVAFLSTVGNTILQNHPNHRVTAKGYTIF
RVERDDEWYERVRYSGTEDHHYVVLPCLEIEERL
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
gtgcagattactgatattcctacaggttggctacttttagatatagagagaaagaaaaag
gctaatggtaaatggaaaatatcagagattgctttggtagattgtactgagaagtatcac
aataaagcattagaaagatcgacagcagatttaacgctagagaaaatcaaaaaatcaaca
gttgttttaggacataatatccgtcggcatgacttagcgacactctttacaaatattccc
tcatggctcaacttgagaatttgcgatactctcgaattatcagcattttttttagttgga
cagcaaacgtataaacttagcaaactatatcgtcaagagcttggattttcagatccctta
gaagatgcttgggagagttttgagctttacgaaaaggttaaagaagtaggcaaaaattta
ccgcctttagtttgctattgggcttggcaacttttaccagatagatatcctttacgtcta
atccctgaaggggaatggctaaacgattggaaaaatcttgaagaaaaatttcctgatgct
gagataaaggcactgcaaaaatatgtggaaactattcctaaaaagccaaatatcaataat
ttaggaataattatatttttaaattggctataccatcttgataagcctctagcccatcgc
cctaaatgggttgaagaaacttttcctcaatttcgagaagctgaagctatcactttccct
tttctatcacaagactacttctcagatgtcaagttggataaagaactaaaattctttttt
ggtgatagttattcttttcgagataatcagttagaacttgtcaaagcatttttgagtaaa
gaagtaactccattgggaattttaccaactggtgggggtaagagtttgacattccagttt
cctgcgttgcttttttcaaaatatcaaagaggactatccgtcatcatttcgcctttacaa
gctttgatgatggatcaagttcaaaatttgcaggaacaattaaaggaaaggcatcctaac
tatgttgacagagttgctttgctatcaggtacacaaagtctcagtgagcagaaagagatt
attgataacttatggcaagggaaagtagatattctttatttatctcctgaaagattgcgt
cagccaactattcaaaggcttttaaagcatcgtttaccagttttatgggtgctagatgag
gcgcatactctttcgcaatggggacatgattttcgtcctgattttatgcggattgcggga
attatcaagaaaatttatcaagataaaatgcatgattgtcgttggggatttgtgacagcg
actgcaacagataaggtagtcgaagatttacaagaaaaagtagaaacaattaattcagat
cagcaaagtggaaagctttttactgggaaattggagattcttcctagagacaaagaatat
tttcaatggcgcaaagaaattacgacttatgttgagagcattcctgaagatgacagacag
gataagatgctatcgattttagagactgaacataatcaacatcctcatggagttgcaatt
gtttatgtacgttttaggaaagaaactgaaagatatgcaaagattatttgcgatcgcaca
aatttgagagctgaagcttttcacggtcgggttaccgcacagaaaaagcaagagatactg
caaaagtttaaggataaacaattagatgttgtagttgcgacaaatgcttttggtatgggt
atagatcgtgaaggcattcatactgtgatccacattgcaccgccagcgactcctgaagca
tatcagcaagagattgggagattggctcgtaagcaaggagaacaaggcaaagcatatcta
tttcaagataatgaagactttgagcgtacatttaatcaagaaaataaatcccaaattagt
tctcaggcaatgcaaggttgttggggtgtaattaaagaaaaattaaagaaaggaaatgga
gatgcttgggtaagtaccttagatctggaaaagcatcttgagtctgatgatccagagatt
cttgcgactcagacaagaaccgtactttatcaattggaagaggggaatctgctcagggaa
gaagaatcatgtccttgcattttgtatatccagttaaataaccatatggcattagccagc
catattccatcatcatcaaaaaatctagttcagtatcttaaagaaattgggattaagcaa
aaagataacgctatcaacttggatgttcaagaagccgctttgtctataccaatgtaccct
actaaaataattaatagtgtacgtcagttagcaaaatctggaataatttcttggcattac
gagattacttttaagtattccgaaaagaaagtcaaaaaaagaattgatgagattttcacc
agaacacaagcttttttacaagacttgcaggaaaaggaaatctttgttgaagaggaaaat
ctgatccgtcttaacaatattgaatctctggaaaaagaaatttcatctaaaaacaaaaac
cttaatttcaaactaaatgatgctttaaaactgctgacaaaattaaagcttgctaagtac
gaaaaaaagagtcgcagcactattaatttttattttaatgataatcaatcctttagtcat
tggataaaaataagtttagaagcttgtaagattcatatcaagaatattcagacagtagaa
actgcactaagtcaagtttttgaactaagaaactggaataggacagatagtcaacttgta
gacatagcagaaattgagttgcaattagaaaatacttatcttgtaggtacaaatcctctt
tctattctgaacctgatgcaaggtttatgtctaattatgttgggtaggggtgattctaat
tacgataggctttatcatgttgttaaaggtagtaaaacaaactttatcaaatctatatat
gaacctcttcgcaaacattatgaacaaagatttcagcgtatccatgcaatcaaagaagtt
ttaaaatatgaagatgagcaaaagagaatagcagttctaagagattatttcttaatgaat
ttagatggttttaatgagaaatattttcctaatatagatattaatagcccgccgataatt
agtgacatacttaacaatcttagtgatgctcaaaaggaaattgtcaaagacgataccagt
agagctttgctagttttggcagggccgggttctgggaaaacgagaactattgtttatcga
gttgctcatttaatagcagtcagtggtgtatcaccatcaaggattttagtcttgtcacat
acacgcactgcggcagcagaagtacgaaaacggctataccaacttttaggagcgaggggg
gcgcaagttgatgcacttacttttcatgctttagcttctaagctaacaggattgagacat
aatgatgctccagataacattggtagaaatgcaagtacagatataaagtttgattggtta
ctaacagaactatttacctaccttcaggaaaatagttctgattatcaatacatactgatc
gatgaatatcaggatattaatgaactgcaatatcagatcgtgaagctattaggcaatttc
cgaagagatgaagaccaagatgaacaacaggatagctttttagttgctgtgggtgatccc
aatcaaaatctatttgagttttctggaagtagtaataaatttattaacgaatttcgtaga
gattggtctatagaggatcaaccagaaagatgtctcttggcgaattatcgatctcttcct
gccatagttgattttacaaatgtgttcatcagccaagcaattcctaataatcaaattaat
caaacaggtggaaaaatttatgctcaccgtgctgatggtattggcgaaatattatgggga
gaatattctcatctataccatgctgcgaaatggatagcagataggattaaagaattaatt
tttgacagacaaattaggcccaatgagatcacaatattagctcatagatggaaagatctc
cgttttcttcagcatttcttgcaagagattggtgttccttatcagttctatgataactct
gagaaactacgtccttctaatagtctgattggtcaaaaaatcttagaatatcttagaaaa
gatccagatctaaaagttgataatccaacagactacttggagaaagttcgcctaatgctt
ggctatagcgatcaagatgttgcatggcaatctctgttagcaaccttggataactgtaag
agtattactcaagaagaaatttgttatctcttagaagaagcaaaaactattagaccagaa
gaagttgtactctctacattccacagtgcaaagggttcagaatttgctcatgtatttgta
cttgaagatggcgatagatttgatctgagtaacaattatgagagttgtactcgaaaactt
tatgtgggatttacaagagcaaaagattctctatctattctttttaagcaaggtacaagg
caaaatgatcctgctttagttgcgatgtctattttaaaaaatagcgaattaaattcaggt
gtatctaaaatcgaaataccaacgatttctttgaatcatcaatctattcgttaccaactt
atattagagcctaaggatttatttttgagtcatcaatctgttcttatagcatctggtcgt
aataggatagactactatggacgtaattggggaagtataagcattgaaggtagatctttt
tactatgaatatggttcctcagataaatcaggtaatgtggcttttctatctacagtaggg
aacacaatattgcaaaatcacccaaatcatagagttacagcaaaaggatatacaatattt
cgtgtcgaacgtgatgatgaatggtatgagagggtaaggtattcaggcactgaagatcat
cattatgtggttttgccttgcttagaaatagaagaaagactgtaa
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