Pseudanabaena sp. ABRG5-3: ABRG53_2817
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Entry
ABRG53_2817 CDS
T05820
Symbol
sigF
Name
(GenBank) group III RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
pser
Pseudanabaena sp. ABRG5-3
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pser03021
]
ABRG53_2817 (sigF)
Transcription machinery [BR:
pser03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABRG53_2817 (sigF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
Sigma70_ECF
HTH_10
SpoIIID
Crp
HTH_24
KORA
HTH_23
HTH_17
Motif
Other DBs
NCBI-ProteinID:
BBC25074
UniProt:
A0A2Z5X099
LinkDB
All DBs
Position
complement(3123929..3125134)
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AA seq
401 aa
AA seq
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MPLDSNQLANENILPLLRAYKVSPSANLQEQIVEIYMGLIRETIADLPISLINQTRIGDR
RSRDRPVVTERRVSNRRTGERRESDRELLEIGKIGFKKALVQFNPEQDTNFSEFARSQIY
QHLENFLQRQHLDNRNEPQDEQDVDITPTINRKQETLEILQAYRANPTTKLRNHLVNLNI
GLVRREAYHWKNQCQESFEDLMQVGSIGLINAIERFDVSKGHAFSSFAVPYIKGEIQHYL
RDKSPTVRMPRAWLATYNQGCKIIRNKRTETGREPSSQEIANELGITVSEWYDIKLACQN
RSPISLDTPVDQSEDSTTSIGDLVTDHKYQSFQLAQEDNIRLQQALDLLEDRTREVVEFV
FLKEFTHREVADTLGISAVTVSRQLKKGLTALKKILATPID
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgccattagattcaaatcaattagcgaatgagaatatattgcctcttttgagggcatat
aaagtttctccatcggcaaacttgcaagagcagattgtcgaaatttatatgggtttaatc
cgtgaaacgatcgccgacctacccatatctctaattaatcaaacaaggattggcgatcgc
cgatctagagatcgtccagtggtaactgaacggcgtgtgtctaatcgcagaactggggaa
cgccgagaaagcgatcgcgagctactcgaaatcggcaaaataggatttaagaaagctcta
gtgcaatttaatcctgagcaagatacaaatttttcggaatttgcgcgatcgcaaatctat
caacacctagagaattttttgcaaagacaacatctagacaatcgtaacgaaccacaggac
gagcaagatgttgatattactcccacgattaaccgcaaacaagaaactctcgaaattttg
caagcctatcgggcgaaccccacaactaaacttcgcaatcatctcgtcaatttgaatatt
ggcttagtgcgccgtgaagcctatcactggaaaaatcaatgccaagaaagttttgaagat
ttaatgcaggttggttcgattggtctgatcaatgcgatcgaaagatttgatgtgagcaag
ggtcatgcctttagctcctttgctgtgccatatatcaagggggaaattcagcattattta
cgggataaaagcccaacggtacggatgccccgtgcttggctagccacctacaaccaaggc
tgtaaaattattcgcaataagcgcactgagactgggcgtgaaccctctagccaagaaatt
gctaatgagctaggtattactgtcagcgagtggtatgacattaaacttgcttgccaaaac
cgatcgcccattagtctcgatacccccgttgatcagagtgaagatagtactacctcgatt
ggcgatctagtcaccgatcacaaatatcaaagttttcagcttgcccaagaagataacatc
cgcttgcagcaggctctcgatctgctagaagatcgtacccgtgaagtggtggaatttgtg
tttttaaaagaatttacccatcgcgaagtcgctgacacattagggattagtgcagttacc
gtgtcacgacagctcaaaaaaggcttaactgccctcaaaaagattttggctacgcctatc
gattaa
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