Pseudanabaena sp. ABRG5-3: ABRG53_2889
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Entry
ABRG53_2889 CDS
T05820
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABRG53_2889 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pser03021
]
ABRG53_2889 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pser03400
]
ABRG53_2889 (rpoC1)
Enzymes [BR:
pser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABRG53_2889 (rpoC1)
Transcription machinery [BR:
pser03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABRG53_2889 (rpoC1)
DNA repair and recombination proteins [BR:
pser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABRG53_2889 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BBC25146
LinkDB
All DBs
Position
3218528..3220564
Genome browser
AA seq
678 aa
AA seq
DB search
MAKVEQRFDYVKIGLASPDRIRKWGERVLPNGSLVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAASVTHVWYLKGI
PSYMATLLDMPLRDVEQIVYFNAYVVLNPGIETEVDGVVVSVNSREIRIRGIDGVERAHL
LHPKHVPTVHENQVVEAGEAIASAYNLSYKQLLSEDQWIDLEDQIYAEDPVLDGIEVGIG
AEAIKQLLQNINLEKEAERLRTDIENSKGQKRAKLIKRLRVVDNFVATGSKPDWMVLDVI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEA
VDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLK
IHQCGLPKEMAIELFQPFVIHRLIKTGLVNNIKAAKKLIQRNDPAVWDVLEDVIREHPVM
LNRAPTLHRLGIQAFEPLLVSGRAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQAEARL
LMLASNNILSPATGRPIVTPSQDMVLGCYYLTTENPYTQRGEGRYFANFNDVVMAYEQKE
IDIHSSVWVRFEGIIEGQGEEKDSEEPKVTILEDGTKVKEFPFRRIREDAEGGLISQYVK
TTPGRVIFNQAIYASLAS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagtggaacagcgatttgactatgtcaagattggcttggcatcacccgatcgc
attcgtaaatggggcgaacgagttctaccaaatggcagtttggttggtgaagtcacaaaa
cctgaaacaattaactaccgcacactcaagccagaaatggatggcttattctgtgagcgg
atttttggtcctgctaaggactgggaatgtcattgtggcaaatataagcgtgtgcgccat
cgtggtattgtttgcgaacgttgcggtgtagaagttacggagtcgcgagtacgccgtcac
cgcatgggcttcattaagctagccgcttcggttacccatgtatggtatctcaagggtatc
cctagctatatggcaaccctactcgatatgcctttacgtgatgtcgagcaaatcgtttac
tttaacgcctacgttgtcctcaatcctgggattgaaactgaggtggatggtgttgttgta
tccgtcaatagtcgtgagattcgcattcgtggcattgatggcgtagaacgcgcccaccta
ctacatcctaagcatgtgccaacggttcatgagaatcaagtagttgaggctggggaggcg
atcgccagtgcctataacctctcttataagcaattgctttctgaggatcagtggatcgat
cttgaagatcaaatctatgctgaagatcctgttttagatggtattgaagttggtattggc
gctgaagcaattaagcaattattgcaaaatatcaatcttgaaaaagaggcggagcgtctc
cgtactgatattgaaaactccaaggggcaaaaacgtgccaaattaatcaagcgtttgcgc
gtagttgataactttgtagcgactggttctaagcccgactggatggtattggatgtaatt
cctgtgattccgccagacttgcgtccgatggtgcagcttgatggtggacgtttcgctacc
agcgacttgaatgatctttaccgtcgcgtgatcaaccgtaacaaccgtttagcacgctta
caggaaattcttgctcctgaaatcatcgtccgtaacgaaaagcggatgttgcaagaagca
gtagatgctttgatcgataacggtcgtcgcggtcgtaccgtagttggcgcaaataatcgt
cccctcaagtctctctcggacattatcgaaggtaagcaaggtcgtttccgtcaaaacttg
ctcggtaaacgggttgattactctggtcgttccgtcatcgtggtgggtccaaatctcaag
attcaccaatgtggtctgcctaaggaaatggcgatcgagctattccagccctttgtgatt
caccgattgatcaaaacaggcttggtaaacaatattaaagctgcgaagaaactgattcag
cgtaatgatccagccgtttgggatgtactcgaagatgtgatccgcgaacaccccgtcatg
ctgaaccgcgctccgacgcttcaccgtttgggtattcaagcctttgaaccattgctagtt
agtggtcgtgcgatccaattgcatcccctcgtttgtcctgcatttaacgccgactttgac
ggtgaccaaatggcggttcacgtacctttatctattgaagcccaggctgaagcccgttta
ctgatgctggcttctaacaacatcctttcgcctgccacaggtcgtccaattgttacacct
agccaagatatggttttaggctgttactatctcactaccgaaaatccctatacccagagg
ggtgaaggacgttacttcgccaatttcaatgatgtggtaatggcatacgaacagaaggaa
atcgatattcattccagtgtatgggtacgctttgaaggcattatcgaaggtcagggtgaa
gagaaagacagcgaagaacctaaggttacgattttagaggatggtactaaggttaaggaa
tttccattccgccgtattcgtgaagatgctgaaggtggattaatttcgcagtatgtcaaa
actacccctgggcgtgtgattttcaatcaggcaatttacgcatcgctggctagttaa
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