Pseudanabaena sp. ABRG5-3: ABRG53_2890
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Entry
ABRG53_2890 CDS
T05820
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABRG53_2890 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pser03021
]
ABRG53_2890 (rpoC2)
03400 DNA repair and recombination proteins [BR:
pser03400
]
ABRG53_2890 (rpoC2)
Enzymes [BR:
pser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABRG53_2890 (rpoC2)
Transcription machinery [BR:
pser03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABRG53_2890 (rpoC2)
DNA repair and recombination proteins [BR:
pser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABRG53_2890 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Peptidase_M23
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
BBC25147
UniProt:
A0A2Z5X114
LinkDB
All DBs
Position
3220650..3224630
Genome browser
AA seq
1326 aa
AA seq
DB search
MADFTISNTDSPEEKKPQRFINRTIDKGQLKKLIAWAFTHYGTTSAANVADQLKALGFRY
ATQAGVSISIDDLQVPASKKALLAAAEQEIEETANRYIRGEITEVERFQKVIDTWNVTNE
NLKDEVVKNFKSNNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNF
REGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVRENDCGTTRGIKLK
AMRDGEKTLIKLSDRLFGRVAAEDIVDPNTGEVIVMRNQEISEDLSLAVQKAGVEEVCVR
SAFTCESTRSVCQMCYGWSLAHAELVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTG
EVAEQQRAPYDGVVKYSKKLKVRPMRTRHGEDAFIVESNGDFTLESAEGKRVYAVTQGST
LLVRDGQKVTQAQLMAEVSATGKTSRKTTEKATKALNTGLAGEVLFSDLAIEEKKDRQGN
TSYVARGEKGRVWVLAGEVYNLPPGAEPTVKNEQQVVEGDVLAETRLITEHGGVVRLSEE
DSRHNREVEIITASVVLDQAIVKEESYQGREHYILETQGGQSFSLKASPGTKLTNNQVVA
ELIDDTYHTKSGGIIKFAGVEVAKRSKGKQGYEVVKGGTLLWVPEETHEVNKDASLLMVE
ENQFIEAGTEVVKDIFSQTAGVVEVFQKNDILREIVIKPGDLHLVDDPQTAMQKNGSLAY
PGTEIMPGLTSPELRYVEYLDSTEGPALLLRPVEEYQVPDVPTVPSQESVNQEGRSIGLR
AVQRIPYKDGDRVKAIDSVELLKTQLLLEVDTDAPQLAADIEFIPNDKDPGSLRLQLVIL
ESLVIRQDTSGDPAHSNSRTRLLVNDGDRIEPGAVVARTEILCKRAGQIRGIRQGSEVVR
RLLVVTEADCITTECPSPSVQPGDLLRAGDEIGAGVITEESGQVLKVEDGKVVFRIGRPY
LVSPGALLQIHDADLVQRGDNIALLVFERAKTGDIIQGLPRIEELLEARKPKEMCVLART
SGTAQVTYDSDDNPEVKILGDDGTLDDDYSFNAGQSVIISDGQKVLAGEAITDGPANPHD
ILDIYFHAYKESLGVRQAALLGLQKVQEFLMNEVQSVYQSQGVDISDKHIEVIVKQMTSK
VRIEDGGDTTRLPGELVELHQVEQINEAMEITGGAPADYTPVLMGITKASLNTDSFISAA
SFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYDTPIVDVDTGYEPDLGY
DEEADDVIIDDNTARNYQIIEPRIEPIRVIDKPRSRRSFDDELVDDDVEFDDDDEEDDDD
DFDDED
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttcacgattagcaacacggattcgcctgaagaaaagaagcctcaacgcttt
atcaaccgtactatcgataaaggacagttgaaaaagctcattgcttgggcttttactcac
tacggaaccactagcgctgctaatgttgctgaccaacttaaagcgttaggctttcgctac
gcaactcaggctggggtgtcgatcagtattgatgacttacaagtacctgccagtaaaaag
gctttacttgcggcggctgagcaagagattgaagaaactgctaaccgttacatccgaggc
gaaatcacggaagtagaacgtttccaaaaggtaattgatacatggaacgtgactaacgag
aacctcaaggatgaggtggtgaaaaactttaagagtaataaccctcttaactccgtatac
atgatggcgttctctggagcgcggggtaatatctcgcaggtacgtcagcttgttgggatg
cggggcttgatggcagatcctcaaggggaaatcatcgacttaccaattaaaaccaacttc
cgtgaaggtttgacagttaccgagtacatcatttcctcctacggtgcgcggaaagggctg
gtagatacggcgctacggacggcggactctggatacctcacccgtcgtctggtagacgta
tcgcaggatgtgatcgttcgggaaaatgattgcggtactactcgcggcattaagctcaag
gcaatgcgtgatggagaaaagaccctcattaagctgtccgatcgcctatttggtcgtgtc
gctgctgaagatattgtcgatcctaatactggcgaagtgatcgtcatgcggaaccaggag
atttccgaagatctttctttggcggttcaaaaggcaggtgttgaagaggtctgtgtacgc
tcagcctttacctgtgaatcgacgcgatcagtttgccaaatgtgctacggctggagcttg
gctcatgccgaattagtagatatcggtgaagctgtgggaattattgccgcgcagtccatc
ggtgaacctggtacacagctaaccatgcgtaccttccacactggtggtgtatttacaggg
gaagttgcggaacaacaacgcgctccctacgatggtgtagtcaaatacagtaaaaagctg
aaagtccgccccatgcgtactcgtcacggtgaagatgcgtttatcgtcgaatcaaacggt
gacttcacgctcgaaagtgctgagggtaagcgcgtttatgctgttacccaaggttcaact
ttgctagtacgtgatggacagaaagttactcaagctcaattaatggctgaggtttcggca
acaggcaagacttctcgtaagactacagaaaaggcaactaaagccctgaatactggttta
gctggtgaagttctcttctcagatctcgcaatcgaagagaagaaagaccgtcaaggtaac
actagttatgtagctcgtggtgaaaaaggtcgggtttgggtcttggctggtgaagtttat
aatctgccccctggtgctgaaccaactgtcaagaatgaacagcaagtcgttgaaggtgat
gttttagccgaaactcgtttgattactgagcatggtggtgttgtgcgtctgagcgaagaa
gacagccgccataaccgtgaggtggaaattattaccgcttcggtagtacttgatcaggcg
attgtaaaggaagagagctatcaaggtcgtgagcattatattctcgaaacccaaggtggt
caaagcttctccctcaaggcttcccccggaactaagctgaccaataatcaggtggttgca
gaactaattgatgatacttaccacaccaagagtggcggtattatcaaatttgcgggtgtg
gaagttgccaagcgcagcaaaggtaaacagggctatgaagttgtcaagggtggcacattg
ctctgggttcctgaagaaacccatgaggtcaacaaagatgcttcgttgttgatggtcgaa
gaaaaccaattcatcgaggctggtactgaagttgttaaagatatcttcagccaaaccgca
ggcgttgttgaagtcttccaaaagaacgatattttgcgcgaaatcgtgattaaaccaggg
gatttacacttggttgacgatcctcaaacggcgatgcaaaagaatggttctttggcttac
cctggcacagaaattatgcccggattgacctctcctgaattgcgctatgtcgaatatttg
gattcgactgaaggtcctgcattactcttgcgtcctgtggaagagtatcaagtgcctgat
gtacctacggttcctagtcaagaatcagtcaaccaagaaggtcgttccatcggtttgcgg
gctgtgcaacggattccctacaaggatggcgatcgcgtgaaggcgatcgatagcgttgag
ctactcaaaacccaattgttgctagaagttgataccgacgcgccccaattggcagccgat
atcgagtttatccctaacgacaaagaccctggtagcttgcgtttgcaactggtaattctc
gaatctttagtaattcgtcaagatacctctggcgatcctgcccatagtaattcgcggact
cgtctgctcgtaaatgatggcgatcgcattgaacccggtgcagttgtggctcgtactgaa
atcctttgcaaacgtgcaggacagattcgcggtattcgtcaaggatcggaagtagtccgt
cgcttactcgtagtgactgaagctgattgcatcaccactgaatgtcctagccccagcgtc
caacctggcgatttactcagagcaggtgatgaaattggcgcaggtgtcattaccgaagaa
tcaggtcaagtcctcaaagttgaagatggcaaggtcgtcttccgtatcggtcgtccttac
ctcgtctcccccggtgcattgctacaaatccatgatgctgacctcgtccaacggggtgac
aacatcgcgctactggtatttgagcgggcaaaaacaggggacattatccaaggtctacct
cggattgaagaactgctcgaagcccgtaagcctaaggaaatgtgcgtacttgcccgtacc
tcaggtactgcccaagttacctacgattctgatgataatcctgaagtcaagatccttggt
gatgatggcacattggatgatgactattccttcaatgctggtcagagtgtgattatctcc
gatggtcaaaaggtactagcaggcgaagcgattaccgatggtcccgcgaatccccatgac
attctcgacatttacttccatgcctataaggaatcccttggcgtgcgccaagcagcgctc
cttggtttacagaaggtacaagagttcttgatgaacgaagtccaatcggtataccaatct
cagggtgtagacatttccgataagcacattgaagttatcgtcaagcagatgacctccaag
gtacgcatcgaggatggtggcgacactactcgtttacctggggaacttgtagaactccat
caagttgaacaaatcaacgaagcaatggaaattacaggtggcgcacctgcggactacacg
cctgtgttgatgggtattaccaaggcaagtttgaacaccgacagctttatctcggcagcg
agtttccaagaaaccactcgtgttctcaccgaggcagcgatcgaaggtaagtctgactgg
ttgcgtggtcttaaggaaaacgtcattatcggtcgtctgattcctgcgggtacaggcttc
aatgcttacgatactccaatcgtcgatgtggatactggctatgagccagatctcggctat
gacgaagaagcagatgatgtgatcattgatgacaatactgcccgtaattatcaaatcatt
gagcctcgcatcgagccaatccgtgtcattgataagcctcgcagtcgtcgcagctttgat
gatgagctagtggatgatgatgtggaattcgatgatgatgacgaagaagatgatgacgat
gattttgatgatgaagactaa
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