Pseudanabaena sp. ABRG5-3: ABRG53_b057
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Entry
ABRG53_b057 CDS
T05820
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABRG53_b057 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pser03400
]
ABRG53_b057 (mfd)
Enzymes [BR:
pser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABRG53_b057 (mfd)
DNA repair and recombination proteins [BR:
pser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABRG53_b057 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
Cas3-like_C_2
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBC26770
UniProt:
A0A2Z5X5U7
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All DBs
Position
ABRG53b:63215..66553
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AA seq
1112 aa
AA seq
DB search
MTFTAVLENIARSTIATKIGDKLKTAKSISLSGLSRLGKGLVSTHLCQQQTKPLLIVTAT
VEEATRWALQLQSMSWRVYLYQPLDTFPYESSQIDLETAWTRIEILAELLAKPQHNLAIA
TTINALQPHLPSTQVFQKHSIYLNIGDSQSVKLLAAALARLGYVEVKEVKESKQWSRKGF
SFEVFPVNRNLPVRLSCNRGTVEKIREFDPTNPKSFTDLSSIAIAPVDLHELNSSHKATL
LHYLPKNFIVTIDESEQCQSYGDRWYEAAEELYQNQLQADTPKLHWDFAKCMTEAKKFQM
LQLTERSLKPKANIFDFASASIPLVPHQFDQIAALIREYLKSEYQVTLISAQPLRVATLL
KEYDCIANFVSNPDDLKSIARIQKAGKPVILKYSGLMEMQGFVLPSCNLALLTDRELFGQ
QLLASPTFVHPSRMTAAKSVNPDELNVGDYVVHRKYGIGKFTRFETIEVKGEKQPHYIVE
FADGKTAVAIAQENEKILSRYRSASNKPPKLNSIANTKAWDNALSKCQKEIYKLARDLLQ
LYVRRANLVGYAFPSDTDWQQEMEDSFPYQLTPDQVKAVQDVKQDMESDRPMDRLVCGDV
GFGKTEVAVRAIFKAVCAGKQVALLAPTTILAQQHFHTLQTRFAAYPFTVDIVNRFRPAK
ERKQVLELVADGKVQVIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKTMKGDVD
LLTLSATPIPRTLYAALSGVREMSVIATPPPSRRSIQTHLSAYDASLVKTAIRHELDRGG
QVFYVVPRIEGIEAIAVSLRLMLPNVRLAIAHGQMQESELESAMVAFNNNEADILLCTTI
IESGLDIPRVNTILIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKRRL
DAIQEFSQLGSGYQLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKI
LPEVADTELQLPRLVAFIPDSYIEDNETKINAYLTLAKVKSKEEILKLAEVWEGLYGALP
EETQVLLRVMELKLVARQVGVFRIYASEGGRDLFLESKLTDSLWELLHAKIPIEFYYRFS
FEKGRIKITSLALLPGDKQVHFLIEWLGCFLN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcacagcagtcctagagaacatagctagatcaaccatcgccacaaaaataggc
gataagctcaaaacagccaaaagcatatccctatcaggactatcacgtttaggcaaagga
ctggtcagcactcacctctgtcaacaacaaaccaaaccattactcatcgtcaccgccacc
gtcgaagaagcaacccgatgggctttacaactccagtccatgtcatggcgcgtctatcta
tatcaaccccttgatacatttccctacgaatctagccaaatagatttagaaactgcttgg
acaaggattgagatattagcagagctgcttgccaaaccacagcataacttagcgatcgct
accaccattaacgctctacagccccatctaccatccactcaagtattccaaaaacatagc
atctatctcaatatcggcgattcgcaatcggttaaattactagctgctgctttggcaaga
ttaggatatgtggaagttaaagaagtaaaggaatcaaaacaatggagccgtaaaggattt
agttttgaagtatttccagttaatcgaaatctaccagtgcgcctaagctgcaatcgcggt
actgtcgagaaaatcagagagtttgaccccactaatcctaaaagcttcactgacctatcc
agcatcgcgatcgcccctgtcgatttgcatgagttgaactcatctcacaaagccacatta
ctgcattacttacccaaaaactttattgtcactattgatgaatccgaacaatgccagagt
tatggagatcgctggtatgaagctgcggaagaactttatcaaaaccaattgcaagccgat
acaccgaaactgcattgggactttgctaaatgcatgactgaggcgaagaagtttcagatg
cttcaacttaccgagcgatcgcttaaacccaaagccaatatttttgattttgccagtgcc
tctattcccctagttccccatcagtttgaccagattgcagcgctgattcgtgaatatctc
aaatcagaatatcaagtcactctgatttcggctcaacctttgcgtgtggcaactttgctc
aaggaatatgactgcattgctaactttgtcagtaatcctgatgatttaaagtcaattgcg
cggattcagaaagctggtaaacctgtaattttaaaatattcgggactgatggagatgcaa
ggctttgttttgcctagttgtaatctagctctcttgaccgatcgcgaattatttggacag
caattactagcatcgccaacctttgtgcatccctcacgcatgactgcggctaagtcggtt
aatcctgacgagctaaatgtgggtgattatgtcgtgcatcgtaagtatgggattggcaag
tttacgcgctttgaaaccattgaagtgaagggagaaaagcaaccgcattacatcgttgag
tttgctgatggtaagactgcggtggcgatcgcgcaggaaaatgagaagattctctcccgc
tatcgcagtgcttctaataagccacccaagttaaacagcatcgccaacaccaaggcttgg
gataacgcgctaagcaagtgccaaaaggagatttacaagttagcaagggatttactgcaa
ctctatgttcgccgagccaatttagtcggctatgcttttccatctgataccgattggcaa
caggagatggaggattcttttccctatcaactcacgccagatcaggtcaaagctgttcaa
gatgtgaagcaagacatggaaagcgatcgcccaatggatcgtttggtttgcggtgatgtc
ggcttcggtaaaacggaggtggcggtaagagcaatttttaaggcggtttgtgcgggtaaa
caagtggctctgttagctcccacgacgattctggcacaacagcatttccatacgctccaa
actcggtttgcggcttatcctttcacagtggatatcgtaaatcggtttcgccctgcgaag
gagcgcaagcaggttttagaactggttgcggatggtaaagttcaagtcattgtcggtacg
catcaactgttgtctaaggatgttgagtttcacgatttgggtttactggtaattgatgaa
gaacaacgctttgggactttgcagaaggagaaaatcaaaacgatgaagggggatgtggat
ttattgactttgagtgctacgccgattccccgtactctctatgcggcgctttctggggtg
cgggaaatgagtgtgattgcgactcctcctccctcaaggcgatcgattcaaacccatctg
tctgcttacgatgcgtcactggtgaaaacggcaattcgccatgagttagaccgtggtggt
caggtgttttatgttgtgccgcgtattgagggaattgaggcgatcgctgtttctttgcgg
ctgatgttgccaaatgtgagattggcgatcgcccatggacagatgcaggagtcggagtta
gagtcagcgatggttgcttttaataacaatgaggcggatattctcctctgtaccacgatt
attgagtcgggtttggatattccgcgtgtgaatacgattttgattgaggatgcccataag
ttgggtttagcgcaactttatcaattgcgtggtcgggttggtcgggcagggattcaggct
catgcttatttactgtatcctcctaaccttgagttgacggatgcagcgaagaggagattg
gatgcgattcaggagtttagtcagcttggttcgggttatcaactggcgatgcgcgatatg
gagattcgtgggttgggggatttgttgggtgaggagcagtcgggtcaggcggatgtgatt
ggctttgcgctgtacatggatttacttcaggaatatattaatgagttacgggggaagatt
ttgcctgaagttgcagatactgagcttcagttgccgcgtttggtggcttttattcctgat
agttatatagaggacaatgagacgaagattaatgcttatttgactttggcaaaggtaaag
tcgaaggaggagattctcaaattggctgaggtttgggagggtctgtatggggctttgcct
gaagaaactcaggttttgcttagggtgatggaattgaagctggtggcgcgtcaggttggg
gtgtttcgcatttatgcttcagagggtgggcgcgatctgtttctggaatcgaagctgacg
gattcgctttgggagttacttcatgcaaagatcccgattgagttctattatcgcttctct
ttcgagaaggggagaattaagattacgagtctggctctcctgcctggggataagcaggtg
catttcttgattgagtggttgggctgttttttgaattga
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