Pseudomonas sp. StFLB209: PSCI_0004
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Entry
PSCI_0004 CDS
T03623
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSCI_0004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pses03019
]
PSCI_0004
03009 Ribosome biogenesis [BR:
pses03009
]
PSCI_0004
Enzymes [BR:
pses01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSCI_0004
Messenger RNA biogenesis [BR:
pses03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSCI_0004
Ribosome biogenesis [BR:
pses03009
]
Prokaryotic type
rRNA processing factors
PSCI_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BAP40706
UniProt:
A0A077LAA8
LinkDB
All DBs
Position
3382..6750
Genome browser
AA seq
1122 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPTDHLETPHFEVQ
RLRDDNPDASTHKTSYEIAAEAAEIEDVAPQASATRTLVRQEAAVKTAPARANAPVPAEA
AAPVAAPVAPTPAHEPSLFKGLVKSLVSLFATSKPEPVAPVAAEKPAVSERPARNEERRN
GRQQSRGRNNRRDEERKPREERGERTPREERVPREERAPREERAPREERAPREERAPREE
RAPREERAPRELREARDESGTREERQPRPPREERQPRERKPREERVRELREPLDAAPAAE
AAAGQPAVAQEERAPREERAPREERAPREERQPRAPREERQPRNEQATETAEDETLNSEE
QAHDEQDGAEGERPRRRSRGQRRRSNRRERQRDANGVEIADGEESGETDNSNALAAGLVV
TAAVAGSVISAPAEAEANRQAEQAQASSDSQAAPAPTPADAVETPVADAPTVTSEAVVQA
PAPAVETPAVESSEPVVAVAAPEVELASETAAEPLIVADNKPAADFTPTPEPVPEPVIEL
EKAPAAPVSESAELSLPVVEAPAAEPEPAPYVAPVVEPVAVVEPEPVVEPAAEPAPVVVP
VVEEAPAVAVASSGRAPNDPREVRRRKREEEERRRLQAEAEAAAAAAAVPAQAPEAEVVA
AAAEPVSEPAPAQVQAEAVVEQTATQPETSTEEQTRESKPLV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccaacgc
ctctacgacctggacatcgagtccggtgcccgcgagcagaagaaggccaatatctataaa
ggccgtatcactcgcatcgagccaagccttgaggctgcctttgtcgatttcggctctgag
cgtcacggcttcctgcccctgaaagaaatctcccgcgaatacttcaagaaggcccctgaa
ggccgggtcaatatcaaggaagtcctgagcgaaggccaggaagtcatcgttcaggtcgag
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tatctggtgctgatgcccaacaacccgcgcgcaggcggtatctcgcgccgtatcgaaggc
gaagagcgcaatgaactgcgtgaagccctcaatggactgatcgcccctgccgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgggacctggac
tacctgctgcaactgtggaccgccatcaaggaagcgtccctggatcgcgccgcgcccttc
ctgatctaccaggaaagtaacgttatcatccgcgccatccgcgactacctgcgccaggac
atcggtgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgacctttatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtaccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtcgaactgcca
tcgggcggctcgatcgttatcgacccgactgaagccctggtgtcgatcgacatcaactcg
gcacgcgccaccaaaggcagcgacatcgaagaaaccgcactgcagaccaacctggaagcg
gctgaagaaatcgctcgccagttgcgcttgcgtgatatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgtgccgtcgaagagaaagtccgtgagtgc
cttgaagccgaccgcgcccgcgttcaggtcggtcgcatttcgcgcttcggcctgctggaa
atgtcccgtcagcggctgcgtccgtcgctgggcgaaagcagcggcatcgtctgcccgcgc
tgcaacggcaccggcattatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctg
attgaagaagaagcgctcaaggaccgtactgctgaagtgcgcgcccaggtgccgatcccg
gtcgcagcattcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgtacc
cgtgcccgcatcatcatcctgccgaccgatcacctcgaaacgccacacttcgaagtgcag
cgcctgcgtgatgacaatccggatgccagcacgcacaaaaccagctacgaaatcgccgcc
gaagcggccgagatcgaagacgtcgcgccacaggccagcgccacccgcactctggttcgc
caggaagccgcggtcaaaaccgctccggctcgcgccaatgctccagtacctgccgaagcg
gcagccccggtagcggctccggtcgctccgacgccagcccacgagccaagcctgttcaaa
ggcctggtgaagtcgctggtcagcctgttcgctaccagcaaacccgagccggttgccccg
gttgccgctgaaaaaccagccgtttccgagcgccctgcgcgcaacgaagagcgtcgcaac
ggtcgccagcaaagccgtggccgcaacaaccgccgcgacgaagagcgcaaaccgcgtgaa
gaacgtggcgaacgtaccccacgtgaagaacgcgtacctcgcgaagagcgcgcaccacgt
gaagaacgtgccccgcgtgaagaacgcgcacctcgcgaagagcgtgcaccgcgtgaagaa
cgcgccccacgtgaagaacgcgcgccacgcgaactgcgcgaagcccgtgacgagtccggc
acacgcgaagaacgtcagccacgcccacctcgcgaagaacgtcagcctcgcgagcgcaag
ccacgcgaagagcgcgtccgtgaactgcgcgaaccactggatgccgcaccggctgccgaa
gccgctgccggccagccagccgtagcccaggaagaacgcgcacctcgcgaagaacgtgct
ccgcgtgaagagcgcgcgcctcgcgaagagcgtcaaccgcgcgccccgcgtgaagagcgc
cagcctcgcaatgagcaagccactgaaaccgctgaagatgaaacgctcaacagcgaagag
caagcccatgacgagcaggatggcgccgaaggcgaacgtccacgtcgccgctcgcgtggc
cagcgtcgtcgcagcaaccgtcgtgagcgccaacgcgatgccaatggcgtggaaatcgct
gatggcgaagagtctggcgaaaccgacaacagcaatgctctggcggccggcctggtggtc
accgcagccgtcgccggcagcgtgatcagcgcacctgccgaagccgaggccaatcgtcag
gccgaacaggcccaggcgtcgagcgacagccaggctgcaccagcaccaacacctgctgac
gcagttgaaacacctgtcgccgatgcaccgaccgttaccagcgaagccgttgttcaagca
cctgccccggccgtcgaaacacctgccgtcgaaagcagcgagccagtcgtcgctgtagcg
gcgccagaagttgagctggccagcgaaaccgctgccgagccactgatcgtggccgacaac
aaaccggctgctgacttcaccccgacgccagagcctgttccggagccggtgattgagctt
gagaaagcaccagcagcgccagtcagcgagtctgccgaactgagccttccggttgtcgag
gcacctgctgccgagccagaacctgcgccttacgtcgcgccggtcgtcgagccggtcgcc
gttgtcgagcccgagccagtcgttgagccagcagccgagccagcccctgtggtcgtcccg
gttgtagaagaggcaccggctgtagctgttgccagctcgggtcgtgcacctaacgatcct
cgcgaagtgcgtcgccgcaaacgcgaggaagaggagcgtcgccgcctgcaagccgaagct
gaagcggctgcggctgcggctgccgtaccggcacaagcacctgaagccgaggtggttgct
gccgcagcagagcccgtgagcgagcctgctccagcccaggtacaggccgaggcagtggtt
gaacaaaccgctacccaacctgaaacctcaactgaagaacagactcgcgaaagcaaaccg
ctggtctga
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