Pseudomonas sp. StFLB209: PSCI_0024
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Entry
PSCI_0024 CDS
T03623
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSCI_0024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pses03019
]
PSCI_0024
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_0024
Enzymes [BR:
pses01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSCI_0024
Messenger RNA biogenesis [BR:
pses03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSCI_0024
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSCI_0024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r1_2
HTH_29
GerE
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAP40726
UniProt:
A0A077LAC0
LinkDB
All DBs
Position
complement(30329..32467)
Genome browser
AA seq
712 aa
AA seq
DB search
MLEQAQRILKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPGLLRDGLC
VVVSPLIALMDDQVATLDELGVSAAALNSTLSAEQQRELAARMRQGQLKMLYLAPERLVQ
PRMLSFLQNLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VEEVAEFLSNSGYPALPYHAGLPAETRASNQRRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQALLAYFDEELPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKSTDKVQNFGHQHLAVFGVGKSRSEGEWRTLFRQLVARGLADIDLE
GYGGLRLTDSCRPLLRGEVSLELRRDLKAQTSTSRSSGGSGSPASQLVRGEEREQWDALR
ALRRRLAQEHGVPPYVIFPDSTLLEMLRGQPRSMAEMARVSGVGARKLERYGEAFLEVLS
GQAEAPKVVADLRHELISLARAGMTPIQIAGQLQCSEKNVYSLLAEAIAGQQLSLEQALD
LQAELQEEIQDAFLDGEGELPAVSDVAAQFSGRVPEGVLYCVRAALQSEFEA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcattctcaaggacatcttcggctacgacagcttccggggg
cgccagggtgcgattatcgagcgcgtggccagcggcggcgatgctttggtgttaatgccc
accggcggcggcaaatcgctgtgcttccaggtgcccggcctgttgcgcgacggcctttgc
gtggtggtgtcgccgctgatcgcgttgatggacgaccaggttgcgaccctcgatgaactg
ggggtgtcggccgccgcgctgaactcgaccctgagcgccgagcagcagcgtgaactggcc
gcgcgcatgcgccagggccagctcaaaatgctttacctggcgcccgagcggctggttcag
ccgcgtatgttgtcgttcctgcagaacctcaatattgcgctgttcgctattgatgaagcg
cactgtgtatcgcaatggggtcatgatttccgtcccgaatacctgcaactgggtcaactg
gccgagctgtttcccgatgtgccgcgcatcgccctgacggctacagccgacaagcggacc
cgcgaagagatcgtcacccgtttgcatttgcaaaatgccgagcgctttttgtcgagcttc
gaccggcccaacatcttttatcgcatcgtgcccaaagagcagccgcgcaagcagttgctc
gcgttcctgtccgagcggcgcagtgatgccggtattgtttattgcctgtcgcgcaaaaag
gttgaggaagtggccgagtttctcagcaacagcggctacccggcgctgccttaccacgct
ggcctgcccgccgagacccgggccagcaaccagcggcgcttccttaacgaggaaggcctg
atcatggtcgccaccgtggcgtttggcatgggcatcgacaagcccaacgtgcgctttgtc
gcgcacctggacctgcccaagtcgctggaagcttattatcaggagaccggccgcgcaggg
cgtgacggtttgcccgctgacgcctggatggcctacggcctgcaggatgtgctgatgctc
aagcaaatgctgcaaaactctgagggcgacgagcggcacaagcgcctggagcagcacaag
ctcgatgccatgctggcactgtgtgaagaaactcgctgccggcgccaggcactgctggcc
tacttcgacgaagagctgccacaaccctgtgggcactgtgacaattgcgtcgacggggtg
cagacctgggatgccaccgagcctgcccgccaggcgctgtcggcgatctaccggaccggc
cagcgctacggggtgggccatctggtggacgtcttgctcggcaagtctaccgacaaggtg
cagaacttcggtcatcagcatctggcggtgttcggggttggcaaaagccgctcggaaggt
gagtggcgcaccttgttccggcaactggtcgcccgtggcctggccgatatcgacctggaa
ggttacggcgggctgcgcctgaccgacagttgccggcccttgctgcgcggtgaggtcagc
ctggaactgcgccgcgatctcaaggcccagaccagtaccagccgcagtagcggcggcagc
ggtagtccggccagccaactggtgcgtggtgaagagcgcgaacagtgggacgcgctgcgt
gccctgcgccgacgcctggcgcaagagcatggggtgccgccgtacgttatctttccggac
tcgaccctgctggaaatgctccggggtcagccacgctcgatggccgagatggccagggtc
agtggcgtgggcgcgcgcaagctggagcgttacggcgaagccttccttgaagtgctcagt
ggtcaggccgaggcgcccaaggtggtggccgacctgcgccacgaactgatcagtctggcc
cgtgccggcatgaccccgattcagatcgccgggcagttgcaatgctcggaaaagaatgtc
tacagcctgctggctgaagccattgccggccagcaactgtcgcttgagcaggcgcttgat
ctgcaagccgaactgcaagaagaaatccaggacgcgtttctcgacggcgagggcgagctg
ccggcggtcagcgatgtggccgcgcaattcagcggtcgggtccctgaaggggtgttgtat
tgcgtgcgtgccgccctgcagtcggagttcgaggcgtaa
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