Pseudomonas sp. StFLB209: PSCI_0466
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Entry
PSCI_0466 CDS
T03623
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pses
Pseudomonas sp. StFLB209
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pses03009
]
PSCI_0466
Enzymes [BR:
pses01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSCI_0466
Ribosome biogenesis [BR:
pses03009
]
Prokaryotic type
rRNA helicases
PSCI_0466
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAP41168
UniProt:
A0A077LDR9
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All DBs
Position
complement(525173..526507)
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AA seq
444 aa
AA seq
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MFSELALHERLLKAVEELKFAEPTPVQAAAIPLALQGHDLRVTAQTGSGKTAAFVLPILN
RLIGPAQVRVDIRALILLPTRELAQQTLKEVERFSQFTFIKAGMITGGEDFKVQAAMLRK
VPDILIGTPGRLLEHLNAGNLDLKKVEVLVLDEADRMLDMGFSEDVERLTGECPNRQQTL
LFSATTGGNALREMTQKVLREPKHLLLNQVSELAEGTRQQIITADHDQHKEAIINWLVAN
ETYQKAIIFTNTKAWADRLYGRLVAQDIKAFVLHGDKDQKDRKAAIDRFKQGGSKVLVAT
DVAARGLDIDGLDLVINFDMPRSGDDYVHRVGRTGRAGSEGLAISLIDHSDWNLMSSVER
YLKQTFERRVIKELKGTYSGPKKVKASGKAVGKKKKTDAKGDKKKTASKTPTKRRTANKP
KSELVSQDGLAPLKKRSTPAPAAE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattagccctgcacgaacgcctgctcaaagccgtggaagagctcaagttt
gccgagcctacacctgtgcaggccgcggccattcccctggcattgcaagggcacgacctg
cgggttacggcgcagaccggcagcggcaagaccgctgcattcgtactaccgatcctcaat
cgcctgatcggcccggcccaggtgcgcgtcgatatccgcgcgctgatcctgctgccgacc
cgcgagctggcccagcaaaccctcaaagaggtcgagcgtttctcgcagttcacctttatc
aaggccgggatgatcaccggcggcgaggacttcaaggtccaggccgcgatgctgcgcaag
gttccggacatcctgatcggcaccccgggtcgcctgctcgaacacctcaatgccggcaac
ctggacctgaaaaaggtcgaagtgctggtgctcgatgaagccgaccgcatgctcgacatg
ggcttttcggaagacgtcgagcggctgaccggcgaatgcccgaaccgtcagcagaccctg
ctgttctcggcgaccaccggcggcaatgcgctgcgcgaaatgacccagaaagtcctgcgc
gagcccaagcacctgctgctcaaccaggtcagcgagctggccgaaggcacccgccagcag
atcatcaccgccgaccacgaccagcacaaagaggcgatcatcaactggctggtggccaac
gagacctaccagaaggcaatcatcttcaccaacaccaaagcctgggccgaccgcctgtac
gggcgcttggtcgcacaagacatcaaagccttcgtgctgcacggcgacaaagaccagaaa
gaccgcaaggcggccatcgaccgcttcaagcaaggcggctcgaaagtgctggtggccacc
gacgtcgcggcccgcggtctggacatcgacggtctggacctggtgatcaacttcgacatg
ccacgcagcggcgacgactacgtgcaccgggtgggccgtaccggccgtgccggcagcgaa
ggcctggccatttcgctgatcgaccactccgactggaacctgatgtcgagcgtcgagcgt
tatctgaagcagaccttcgagcgccgggtgatcaaggaactcaaaggcacctacagcggg
ccgaagaaggtcaaggcttccggtaaagcggtcggcaaaaagaaaaagaccgacgccaag
ggcgacaagaaaaaaaccgccagcaaaaccccgaccaagcgtcgcacggccaacaagccg
aagtctgagctggtcagccaggacggcctggcgccgctgaaaaagcgcagcaccccagcc
ccggccgccgagtaa
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