Pseudomonas sp. StFLB209: PSCI_1076
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Entry
PSCI_1076 CDS
T03623
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSCI_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_1076
Enzymes [BR:
pses01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSCI_1076
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSCI_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAP41778
UniProt:
A0A077LFM4
LinkDB
All DBs
Position
complement(1176921..1180610)
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AA seq
1229 aa
AA seq
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MNSSLTSRPLALRFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGDELTGFGRELLPPQ
ILVVTFTDAATKELRDRIRTRLAEAARFFRDEIPAPDALIAELRSDFEPEQWPGCASRLD
IAAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQSLETDHSELLGEVLRDYWRRFCYPM
DGVALDWVRDHWGGPNALLSRVRGLFGRDYPVVEQEPAQLIAEALERRRAALRALKAPWA
AWAQELDTIFTQAVAAKQVNGRQIQERYFKPWFDKLTTWAQDEDQVDLDLGTGFTRLTPD
GVAESWKSNPPTHPALDAMLTLKRQLDDLPTPDAQLLQHAARWVSLRFESEKRRRAEMGF
DDMLLRLDAALSAGGGDRLTTLIREQFPVALIDEFQDTDPVQYRIFDSIYRLEQNDESTG
LFLIGDPKQAIYAFRGADIYTYLRARKATAGRWHTLDTNFRSSVAMVEAANQVFMRAEQR
DSGRGAFLFRHGNDNPVPFAPALAQGRKERLELAGQPLTALTIWQLCDDQPVSGATYRQQ
LAATCASEIVRLLNAGQRGEAGFVRPGEALRALLPADIAILVRDGKEAQAVRGELAARGV
RSVYLSDKDSVFAAQEAHDVLAWLKACAEPDAERTLRGALASITLGLPLTELERLNQDEL
AWERRVMQFRGYRNVWRYQGVLPMLRRLLHDFQLPQTLIARSDGERVLTNLLHLSELLQQ
AAAELDGEQALIRHLGEQLMLSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPF
ICSSKPVDGSRLPLQFHDDDGLARISLQPTAELIERADDERLAEDLRLLYVALTRSEHAC
WLGVTDLKRGAGKNSQLHRSALGYLLGGGAALSDSAQLGEWLNALVKDSPAMLLEPLPEP
CAERFSAPRNQAALLKPLTPRRKAAENWWIASYSALRIGDGMLTGSDSAPDTALAQKLFD
DDRPDPQAAREAVPGATDIHRFPRGPNPGTFLHGLLEWAGKEGFALTASDPEGVRDTVAR
RCSRRGWDSWIKPLSDWLLDLLQMPLPLPGNASLSGLEQPNQYRIEMEFWFASRQVDVLR
VDELVRRHTHHNLPRAPLQPAALNGMFKGFIDLTFEHEGRYYVADYKSNWLGADDDAYTP
AAMETAMLEHRYDLQYVLYLLALHRQLKARLADYDYDLHMGGALYLFLRGNRAPGQGVYF
TRPPRELIESLDLLFQGLLPIPAESGEPA
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaatagctccctgacctcgcgccccctggcgctgcgctttccgctgcgtggcagccaa
ctgatcgaagccagcgccggcaccggcaagacgttcaccatttcggcgctctacctgcgc
ctggtactgggccatggtgacgagttgaccggctttggccgtgagttgttgccgccgcag
attctggtggtgaccttcaccgacgccgcgaccaaggaactgcgtgaccggattcgtacc
cgtttggctgaagcggcacgttttttccgcgacgagatcccggcccccgatgccttgatc
gccgaactgcgcagcgacttcgagcctgagcaatggcccggctgcgcgagccggctggat
atcgccgcgcaatggatggacgaagcggctgtttcgaccattcacagctggtgccagcgc
atgctgcgtgagcacgccttcgacagcggcagcctgtttacccagagtctggaaaccgac
cacagtgaattgctcggcgaagtgctgcgtgattactggcgacgtttttgttaccccatg
gatggcgttgcactggactgggtgcgggaccactggggcgggccgaatgcgctgttatca
cgggtgcgcggcctgttcggtcgtgattacccggtggtggaacaagagcctgcgcagttg
atcgctgaggcactggagcggcgccgtgccgcgctgcgggcactcaaggcaccctgggca
gcctgggcacaggaactggatacgatcttcacccaggcggtggcggccaagcaggtcaat
ggccgacagattcaagagcgttacttcaagccctggttcgacaaactcactacttgggcg
caggacgaggatcaggtcgaccttgatctgggtaccggctttacccgtctgacgcctgac
ggcgttgctgaatcctggaagagtaacccgccgacgcacccggcacttgatgccatgctg
actctcaagcgtcagttggacgacctgccgacccccgatgcgcagttattgcagcatgcc
gctcgctgggtcagcctgcgttttgaaagcgaaaaacgccgccgtgccgaaatgggcttc
gacgacatgttattgcgcctcgatgctgcgttgagtgccggtggcggtgaccgcctgacg
accctgatccgtgagcagttcccggtggccctgatcgatgaattccaggacaccgacccg
gtgcagtaccggatctttgacagtatctatcgtctggaacaaaacgacgaaagcaccggt
ctgttcctgatcggcgaccccaagcaggcgatctacgcctttcgcggtgctgatatctac
acctacctgcgcgcccgtaaagccactgcgggccgttggcatacactggacaccaatttt
cgctccagtgtcgccatggtcgaggcggccaaccaggtgttcatgcgcgccgagcagcga
gacagcgggcgcggtgcgttcctgtttcgccacggcaatgacaacccggtgccctttgcc
ccggcgctggctcaggggcgcaaagagcgtctggaacttgccggccagccgctcacggca
ctgaccatctggcaactctgtgacgatcagcccgtctccggtgcaacctatcgacagcaa
ctggcggcgacctgtgccagtgagatcgtccgcttgctcaatgccggtcagcgcggggaa
gccggttttgtccgccccggcgaggcgctgcgcgcgctgttgccagcagacattgcgatc
ctggtacgcgatggcaaagaggcccaggcggtgcgcggcgagctggccgcccgtggggtg
cgcagcgtgtacctgtcggataaagactcggtgttcgccgcccaagaggcccatgatgtg
cttgcctggctcaaggcctgtgccgaaccggatgccgaacggaccctgcgtggcgcactg
gcgagcatcaccctcggcctgccactgaccgagctggaacggctgaatcaggacgaactg
gcctgggagcggcgggtgatgcagtttcgtggctatcgcaacgtctggcgctatcagggc
gtactgccgatgctgcgtcgcctgctgcatgacttccagttgccgcagaccctgatcgcc
cgcagtgatggcgagcgggtgctgaccaacctgttgcatttgtccgagttgctgcaacag
gccgccgctgaactggatggcgagcaggcgctgattcgccatctgggcgagcagttgatg
ctcagcggccaggccggtgaagagcagatcctgcgtctggaaagcgacgagcaactggtc
aaggtggtgaccatccacaaatccaagggcttgcagtacccgttggtatttctgccgttc
atctgctccagcaaaccggtggatggcagtcgcctgccgctacagtttcacgatgatgac
ggcttggcgcggatcagcctgcaaccgaccgcagagctgatcgaacgcgccgacgatgaa
cgcctggctgaagacctgcgcttgctttatgtggcgctgacccgctctgagcacgcgtgt
tggctgggcgtcaccgacctcaagcgcggcgccgggaaaaactcgcaactgcatcgctcg
gcgctgggctacctgctcggtggtggtgctgcactgagcgatagcgcgcaactgggggaa
tggctcaatgcgctggtcaaggacagcccagccatgttgctggagccactccctgagcct
tgcgcagagcgctttagcgcgccacgtaatcaggccgcgctgctcaagccgctgacgcct
cggcgcaaggcggctgaaaactggtggattgcttcctacagtgcgctgcgcattggtgat
ggcatgctcactggcagcgacagcgcaccagacacggcgctggcccagaagctgttcgac
gacgaccgtcctgacccgcaagcggcccgtgaagcagtaccgggtgctaccgacattcat
cgcttcccgcgcgggccgaatccgggcacctttctccatggcctgctggaatgggccggt
aaagagggctttgcactgacggccagtgatcccgaaggcgtacgcgacaccgtggcgcgg
cgttgtagccggcgcggctgggacagctggatcaaaccgctcagcgactggctgctggac
ctgttacagatgccattgccgttgccgggcaatgcctcgttgagcggccttgagcaaccc
aatcagtaccggatcgagatggagttctggttcgccagtcgtcaggtcgatgtgctgcgg
gtggatgagctggtacgccgccatacccaccacaacctgcctcgtgcgccgctgcagcct
gccgcgctcaatggcatgttcaaaggctttatcgacctgacctttgagcatgaagggcgc
tactacgtggccgactacaaatccaactggctgggtgccgatgacgacgcctacacaccg
gcggccatggagacggcgatgcttgaacaccgttacgacttgcaatacgtgctgtacctg
ctggcgctgcatcgtcagctcaaggcgcgcctggccgactacgactatgacctgcacatg
ggcggtgctctgtatctgttcttgcgcggtaaccgggcgccggggcagggcgtgtatttc
acccggccaccccgcgagttgatcgaaagcctcgacttgctgtttcagggcctgttaccc
atcccggctgagtcaggagagcccgcatga
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