Pseudomonas sp. StFLB209: PSCI_1077
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Entry
PSCI_1077 CDS
T03623
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSCI_1077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_1077
Enzymes [BR:
pses01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSCI_1077
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSCI_1077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
BAP41779
LinkDB
All DBs
Position
complement(1180607..1184071)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPHTTSLNAGFMVVHGNRLDELRSLAVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DTEDDDLGGCGIAAAIDVQLPGSFMWQLYRAVLGRDEIPQTSLLDKAPLTWRLMRLLPEL
INQPHFEPLQRFLTADTDLRKRYQLSERLADLFDQYQVYRADWLEDWAAGRHQLRSVRGE
IKPLNPANIWQAELWRALLHDVGVAGMAQSRAGVHQRFIERVQTMTDAVPGLPPRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKPGTPQVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSHDNPHSYRFCFKDERIDLFSEGEPHHMLSQL
QDDILELRPLDETRELWPAVDTLQDRSIRFHVAHSAQREVEILHDQLLARFSKDPQLRPR
DVIVMVPDIDSYAPHIRAVFGQLERDDKRFIPFTLADQGQRGREPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGIKERDLPTLHRWIEGAGVRWGLDASQREGLGLPEALEQNS
WQFGLQRMLLGYAVGSGAAFQDIEPYDEIGGLDAALIGPLVALIDALDVAHAELSTQATA
QDWGVRLQNLIQVFFQAQSEHDDYLLVQLENLREDWLQTCESVGLLDPLPLTVVREAWLA
GLDQGRLSQRFLAGSVNFCTLMPMRAIPFKVVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEAVLSARDQLYISWVGHSIRDNSERPSSVLIGQLRDHLASGWRLAQ
DESDLTSGEALLNALTLAHPLQPFSARYFHEGYGYFSFAREWQALHSGDAAPLEQTQLSA
HDPQEPLTLALLQDFLRNPVKHFYTQRLKIFFDQAQAPLADEEPFVLDALQRYGLSESLL
AAALLDLDNSDQAMQSQAQRLQGSGLLPMAGFGTSMQAELIAPLPDVLQRYQSLLSRWPE
PVHSALPVSFEYRQVRLEGWLGGLHRNAQGQLLAVTVVPNAIGSQKTRKWHRLIRPWVNH
LAASACDLSLTTALVASDETLLLPPLEVDAARECLGYLLSGWLNGMQHPLPVAAKTAFAW
LAQAGDDLKAEAAARKAYEGDGQNTNGERAESTALLRQYPDFAALQDSELFSGWCESLYK
PLFDAPWQGEEAGQ
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccacacactacctcactgaacgccggtttcatggtggttcatggcaatcgactggac
gagttgcgcagcctggcggtgtcctggatgcggcgttaccctctggcgccgctggagaat
gaaattgccttggtacagagcaacgggatcgcgcaatggctcaagcttgccctggccgaa
gataccgaggatgacgacctcggcggttgcggcattgccgccgctatcgatgtgcaactg
ccgggcagtttcatgtggcagctttaccgcgccgtactgggccgtgatgagatcccgcag
acctctctattggacaaggcgcccctgacctggcggctgatgcggttgctaccggagttg
atcaatcagccacacttcgagccgctgcaacggttcttgaccgcagacaccgacctgcgc
aagcgttatcaattgtccgagcgtctcgctgacctctttgaccagtatcaggtgtatcgc
gccgactggctggaagactgggctgccggtcgccatcagttacgttcggtgcgcggcgaa
atcaagccattgaacccggccaatatctggcaggccgaactgtggcgcgccctgctgcac
gatgtcggtgttgccggtatggcccagagccgtgccggagtgcatcagcgtttcatcgag
cgggttcagaccatgaccgatgcggtgccggggttaccgccacgggtcatcgtctttggt
atttcatcgttgccggcccaggcgctggaggctttggccggtctggccaggttcagtcag
gtgctgctgtgtgtgcataacccgtgtcggcaccactgggccgatatcgtcgctgacaaa
gacctgctgcgtcaccaatacaagcgccaggcacgtaaacccggtacgcctcaggtgctt
gatccacagactttgcatcagcacgcgcacccgttgctcgcagcctggggcaagcaaggc
cgtgattacatcaacctgctggacagtcacgacaacccgcacagctatcgtttctgcttc
aaggacgagcgcattgacctgttcagcgagggcgagccacaccacatgctcagccagttg
caggacgatattctggaactgcgcccgctggacgaaacccgtgagctatggcccgcagtc
gataccctgcaagaccgctcgatccgctttcatgtggcccacagtgcccagcgtgaggtg
gagattctccatgatcagttgctcgcccggttcagcaaagatccgcagttacgcccccgc
gatgtgatcgtcatggtcccggacatcgacagctatgcgccacacatccgcgcagtgttc
ggccagcttgagcgcgacgacaaacgcttcatccccttcaccctggcagaccagggccag
cgtggtcgcgagccgctgctgatcgcggtggagcatttgctcaagctgccggacagccgt
tttccggtcagtgaaatccttgacctgctggatgtcccggcgctgcgtgcccgctttggg
atcaaggagcgtgacctgccgaccctgcatcgctggatcgaaggcgccggtgtgcgctgg
gggctggatgccagtcagcgcgaaggtctcggattgcccgaggcgctggagcagaatagc
tggcaatttggcttacagcgcatgctcttggggtatgcagtaggctccggcgccgcgttt
caggacatcgaaccttacgatgaaatcggcggcctggacgccgcgctgatcggcccgctg
gtggccttgattgatgcgctggatgtggcgcatgccgagctttccacgcaggccactgcg
caggactggggtgtgcgtctgcagaacctcattcaggtgtttttccaggcgcagagcgaa
cacgatgactacctgctggtgcagttggagaacctccgtgaggactggctacagacctgt
gagtcagtcggtttgctcgatccattgccgctgacggtggtacgcgaagcctggctggcc
ggtctcgatcaagggcgtctgtcgcagcgtttcctcgccggctcggtcaacttctgcaca
ctgatgccgatgcgtgccattccgttcaaggtggtctgcctgctgggcatgaacgacggt
gactatccgcgcgcgcagccgccgctggacttcgacctgatgggcagtgattaccgcccc
ggtgaccgctcacgtcgcgaggatgatcgttatctgttgcttgaagccgtgttgtcggcc
cgtgaccagctgtatatcagttgggtcggccacagcatccgggacaacagcgagcggccc
tcttcggtgctgatcggccaactgcgtgatcacctggccagtggttggcgactcgcgcag
gacgagtctgacctgacgagcggtgaagctctgctcaacgcgctgaccctggcccatccg
ctacagccgttcagtgcccggtattttcatgaaggttatggctacttcagttttgcccgt
gagtggcaggcgctgcacagcggcgacgcagcgcctctggagcagacccaattgtctgcc
catgatccacaagagccgctgacgctggcgctgttgcaggatttcttgcgtaatccggtc
aagcatttctatacccagcggttgaaaattttcttcgatcaggcccaggcaccactggct
gatgaagagccgttcgtgcttgatgcgctgcaacgctatgggctcagtgaaagcctgctg
gctgcggcgctgctcgacctggataacagcgaccaggccatgcagtcccaggcgcaacgc
ttgcagggcagcggtctgttgccgatggccgggttcggcacctcaatgcaggccgaactg
atcgcgccgttaccggatgtactgcaacgttatcaatcattgctcagccgctggcctgag
ccggtccatagcgctttgccggtcagcttcgagtaccgccaggtgcgtcttgaaggctgg
ctgggcggcttgcatcgcaatgctcaaggtcagttgctggcggtcaccgtggtgcccaat
gccatcggctcgcaaaagacccgcaaatggcatcgtctgatccgtccatgggtcaatcac
ctggcggcttcggcttgtgacctgagcctcaccaccgccttggtggccagcgatgaaacc
ctgctgttgccgcctctggaggtagacgccgcccgtgagtgcctgggttatctgttgagc
ggctggctcaacggtatgcagcatccgttaccggtcgccgccaagacggcgtttgcctgg
ctggctcaggccggcgacgatctcaaggctgaagctgcggcgcgtaaagcttatgaaggc
gatggtcagaacactaacggcgaacgcgccgaaagcacggcactgttgcgccaatacccg
gattttgccgctctgcaagacagcgagctcttttccggctggtgtgagtcgctgtacaaa
cccttgttcgatgcgccctggcagggcgaggaggccggtcaatga
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