Pseudomonas sp. StFLB209: PSCI_1459
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Entry
PSCI_1459 CDS
T03623
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSCI_1459 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pses03021
]
PSCI_1459 (rho)
03019 Messenger RNA biogenesis [BR:
pses03019
]
PSCI_1459 (rho)
Transcription machinery [BR:
pses03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSCI_1459 (rho)
Messenger RNA biogenesis [BR:
pses03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSCI_1459 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAP42161
LinkDB
All DBs
Position
complement(1591302..1592561)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALIETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLTDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggatgtgattttcgccctgctcaag
aagcacgcaaagagcggcgaagaaatctccggtgatggtgtgctggagatcctccaggac
ggcttcggtttcctgcgttccgcagatgcttcctatctggccggcccggacgatatctac
gtctcgccaagccagattcgccgcttcaacctgcgtaccggcgacactattgtcggcaag
atccgccctccaaaggaaggcgagcgttatttcgccctgctcaaggttgactcgatcaac
ttcgaccgcccggaaaacgccaagaacaagatcctgttcgagaacctgacccccctgttc
ccgaacaagcgcctgaaaatggaagccggtaacggttccaccgaagacctgaccggccgg
gtcatcgacctgtgcgcacccatcggtaaaggtcagcgtggcctgatcgtcgctccgcca
aaagcgggcaagaccatcatgctgcagaacattgcggccaatatcacccgcaacaaccct
gaatgccacctgatcgtgttgttgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtcgtcgcttcgaccttcgacgagccgccgacccgtcacgtg
caggttgccgagatggtgatcgagaaggccaagcggctggtcgagcacaaaaaggatgtg
gtcatcctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggcggtgtcgatgctcacgccctggagaagccgaagcgtttc
ttcggtgctgcgcgtaacatcgaagaaggcggttcgctgaccatcatcgcgactgcgttg
atcgaaaccggttcgaagatggacgaagtcatctacgaagagttcaagggtactggcaac
atggaactgcccctggaccgtcggatcgccgagaagcgcgtcttcccggccatcaatatc
aaccgttccggcacccgccgtgaagagttgctgaccgccgacgacgaactgcaacgcatg
tggattctgcgcaagctgctgcacccgatggacgaaatcgccgccatcgagttcttgacc
gacaagctcaagacgaccaagaccaacgatgagttcttcctgtccatgaaacgcaagtaa
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