Pseudomonas sp. StFLB209: PSCI_2103
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Entry
PSCI_2103 CDS
T03623
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSCI_2103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pses03019
]
PSCI_2103
Enzymes [BR:
pses01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSCI_2103
Messenger RNA biogenesis [BR:
pses03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSCI_2103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAP42805
UniProt:
A0A077LE98
LinkDB
All DBs
Position
complement(2306518..2308413)
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AA seq
631 aa
AA seq
DB search
MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDIVSLAGKLLHDPERIEVTPPNTTVERIEQRVFRLPSSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLTKHGLSAVPIHGNKSQNARTKALADFKAGEV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRTGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLQGFDINAVEAEKPEVREPRQPRNPRNARGEGGEKSEKGSGGRR
DKGKDKGREKDKAKDSAAAPAGERPARKPREKKPREGTGRDGGGREQQPQRASTPPRPPA
NRDPEEFLDDDVDNFGNRADYVSPYQGKPGQGRGRRPAGQGASNGAARPHGQGPAQPRSN
GGARNANGGSGQGKRTGGGAARSGAPRGQSRDRRPLREEPAVRPQERQPPQPKIMHKESK
IDRFPTPEMLDQLPSRPRGEKPALLTRNRED
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgcgctgtcgaagcggcgggc
tacacccagcctactcccgtgcaacagcgggcgattcccgccgtgttgcaaggccgcgat
ctgatggtcgccgcccagacaggtactggtaagaccggtggtttcgccctcccgatcctg
gagcggctgttccccaacggtcatccggacaaatcccagcgtcatggcccgcgccagccg
cgcgtactggtcctgaccccgacccgcgaactggccgcccaggtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcattttcggcggcgtaggcatgaac
ccgcaggtccaggccctggccaagggcgttgacgtgctggtcgcctgcccgggccgcctg
ctcgacctggccggccaaggcagcgtcgacctgtcccacgttgaaatcctggtcctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaggtcttggcccgt
ctgccggccaagcgccagaacctgctgttctcggcaaccttctccaatgacatcgtgtcg
ctggccggcaagttgctgcacgacccggagcgcatcgaagtcactccgccgaacaccacg
gtcgagcgcatcgagcagcgcgtcttccgcctgccatcgagccacaagcgtgcgctgctg
gcccacctgatcactcagggtgcctgggagcaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctgaccaaacacggtctgagcgctgtgccaattcac
ggcaacaagagccagaacgcccgtaccaaagccctggccgacttcaaggccggcgaagta
cggatcatggttgccaccgatatcgccgcccgcggcctggacatcgaccagttgccacat
gtggtcaacttcgaactgcccaacgtcgacgaagactacgtgcaccgtatcggccgcacc
ggccgtgcgggccgcaccggtgaggcgatctcgctggtggcgccagacgaagagaagctg
ctcaagagcatcgagcgcatgacccggcagaagatccctgacggtgacctgcaaggtttc
gacatcaacgccgtagaggccgagaagccggaagtgcgcgagccgcgccagccacgtaac
ccgcgcaatgctcgcggcgaaggcggcgagaagtccgagaagggcagcggcggccgtcgt
gacaaaggcaaggacaaaggccgcgagaaagacaaggccaaagacagcgcagcggcgccg
gccggtgagcgtccggcccgcaagccacgcgagaaaaagcctcgcgaaggcactggccgt
gacggtggtggccgtgagcaacagccacaacgcgccagcacaccgccacgtccgccggcc
aaccgtgatccggaagagtttctcgatgacgatgtagacaactttggcaaccgcgccgac
tacgtcagcccttaccagggtaagcctggccagggtcgtggccgtcgcccggccggtcag
ggtgccagcaacggtgctgctcgcccgcatggtcaaggcccggctcagccgcgcagtaat
ggcggtgcacgcaacgccaatggcggttcaggccagggcaagcgcactggcggcggtgca
gcacgcagtggtgcgccacgcggccagtcccgtgatcgtcgcccactgcgcgaagagcct
gccgtgcgtccccaggagcgtcagcccccgcaacccaagatcatgcacaaggagtcgaag
attgatcgcttcccgacgccagaaatgctcgatcagttgccaagccgcccacgcggtgaa
aaacccgcgctgctgactcgcaaccgcgaagactga
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