Pseudomonas sp. StFLB209: PSCI_2170
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Entry
PSCI_2170 CDS
T03623
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSCI_2170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_2170
Enzymes [BR:
pses01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PSCI_2170
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSCI_2170
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSCI_2170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BAP42872
LinkDB
All DBs
Position
2392325..2393137
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLQGQRVSRVIVRDHRLRWPVPEDLDVRLSGQRIVEVGRRAKYL
LIQAEVGTLISHLGMSGNLRLVEAGLPALKHEHVDIELESGLALRYTDPRRFGAMLWSQD
PHNHELLVRLGPEPLTDLFDGLRLYEKSRGKSIAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGSISRARYVKLAVEIKRILAYAIERGGTTLRDFIGGDGKPGYFQQELFAYGR
GGLPCKVCGSLLREIKLGQRATVFCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccagaggtcgaaaccacccgccgcggtatcgcgccacatctgcaaggt
cagcgggtcagccgggtgatcgtgcgcgatcaccgcctgcgctggccggtgccggaagac
ctggatgtgcgcctctcggggcaacgcattgtcgaggtcgggcgacgcgccaaatacttg
ttgatccaggccgaagtcggtacgctgatcagccatctgggcatgtccggtaacctgcgc
ctggtcgaggcgggtctgccggcgctcaagcacgaacatgtggatatcgagctggagtcg
gggctggcgctgcgctacaccgacccaaggcgctttggcgccatgctctggagtcaggac
ccgcacaatcacgagttactggtgcgcctggggccggagccgctgaccgatctgttcgat
ggcctgcgcctgtacgagaagtcgcggggcaagtccatcgcggtcaagccgttcatcatg
gacaacgcggtggtggtcggggtcggcaatatctacgccaccgaggctttgttcgctgcc
ggtatcgacccgcgccgtgaggcgggcagcatttccagagcgcgttatgtaaagctggcc
gtcgaaatcaagcgtatcctggcctatgccatcgagcgtggcggcaccaccttgcgtgat
ttcatcggtggtgatggcaagcccggctatttccagcaggagctgttcgcctatggccgg
ggtgggctaccgtgcaaggtgtgcggcagtctgttgcgggaaatcaaactgggtcagcgc
gccacggtcttttgtccgaagtgtcagcgctga
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